| Package Name | Access | Summary | Updated |
|---|---|---|---|
| mtsv | public | MTSv is a suite of metagenomic binning and analysis tools. | 2025-09-18 |
| comebin | public | COMEBin allows effective binning of metagenomic contigs using COntrastive Multi-viEw representation learning | 2025-09-18 |
| hecatomb | public | Hecatomb: and end-to-end platform for viral metagenomics | 2025-09-18 |
| pantools | public | PanTools is a pangenomic toolkit for comparative analysis of large numbers of genomes. | 2025-09-18 |
| aminoextract | public | Extract amino acid sequences from a fasta file based on a GFF | 2025-09-18 |
| beagle | public | Beagle is a software package for phasing genotypes and for imputing ungenotyped markers. | 2025-09-18 |
| expam | public | Metagenomic profiling using a reference phylogeny | 2025-09-18 |
| biobb_haddock | public | biobb_haddock is the Biobb module collection to compute information-driven flexible protein-protein docking. | 2025-09-18 |
| haddock_biobb | public | HADDOCK3 is the next generation integrative modelling software in the long-lasting HADDOCK project. | 2025-09-18 |
| filtlong | public | Filtlong is a tool for filtering long reads. It can take a set of long reads and produce a smaller, better subset. It uses both read length (longer is better) and read identity (higher is better) when choosing which reads pass the filter. | 2025-09-18 |
| augur | public | Process pathogen genome data for the Nextstrain platform. | 2025-09-18 |
| biobb_adapters | public | Biobb_adapters is the Biobb module collection to use the building blocks with several workflow managers. | 2025-09-18 |
| biobb_flexserv | public | Biobb_flexserv is the Biobb module collection for biomolecular flexibility studies on protein 3D structures. | 2025-09-18 |
| trinity | public | Trinity assembles transcript sequences from Illumina RNA-Seq data. | 2025-09-18 |
| pcasuite | public | PCAzip compresses a trajectory, recentering the snapshots using a standard RMS or a gaussian version. | 2025-09-18 |
| stripepy-hic | public | StripePy recognizes architectural stripes in 3C and Hi-C contact maps using geometric reasoning | 2025-09-18 |
| influx_si | public | Metabolic flux and concentration estimation based on stable isotope labeling | 2025-09-18 |
| magneto | public | MAGNETO is an automated snakemake workflow dedicated to MAG reconstruction from metagenomic data. | 2025-09-18 |
| crispritz | public | CRISPRitz, tool package for CRISPR experiments assessment and analysis. | 2025-09-17 |
| strvctvre | public | StrVCTVRE, a structural variant classifier for exonic deletions and duplications | 2025-09-17 |
| vcfdist | public | vcfdist: benchmarking phased germline variant calls in VCF format. | 2025-09-17 |
| snap-aligner | public | Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data | 2025-09-17 |
| camlhmp | public | Classification through yAML Heuristic Mapping Protocol. | 2025-09-17 |
| usher | public | Ultrafast Sample Placement on Existing Trees (UShER). | 2025-09-17 |
| dsrc | public | high-performance compression of sequencing reads stored in FASTQ format | 2025-09-16 |
