|
rosella
|
public |
Metagenomic binning pipeline and algorithm using UMAP and HDBSCAN
|
2024-10-22 |
|
perl-excel-writer-xlsx
|
public |
Create a new file in the Excel 2007+ XLSX format.
|
2024-10-22 |
|
cosigt
|
public |
Cosigt (COsine SImilarity-based GenoTyper)
|
2024-10-21 |
|
pyhmmsearch
|
public |
Fast implementation of HMMSEARCH optimized for high-memory systems using PyHmmer.
|
2024-10-21 |
|
metagenome-atlas
|
public |
ATLAS - Three commands to start analysing your metagenome data
|
2024-10-21 |
|
irma
|
public |
IRMA: Iterative Refinement Meta-Assembler for the robust assembly, variant calling, and phasing of highly variable RNA viruses.
|
2024-10-21 |
|
splash
|
public |
Unsupervised and reference-free unifying framework to discover regulated sequence variation through statistical analysis of k-mer composition in both DNA and RNA sequence.
|
2024-10-21 |
|
biobb_cp2k
|
public |
Biobb_cp2k is a BioBB category for CP2K QM package.
|
2024-10-21 |
|
svdss
|
public |
Structural Variant Discovery from Sample-specific Strings.
|
2024-10-21 |
|
centrifuge-core
|
public |
Classifier for metagenomic sequences. Does not include evaluation scripts
|
2024-10-21 |
|
ezcharts
|
public |
eCharts plotting API.
|
2024-10-21 |
|
tower-cli
|
public |
The Tower CLI an interface to Nextflow Tower via the CLI
|
2024-10-21 |
|
kb-python
|
public |
A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing.
|
2024-10-21 |
|
abyss
|
public |
Assembly By Short Sequences - a de novo, parallel, paired-end short read sequence assembler.
|
2024-10-21 |
|
abismal
|
public |
abismal is a fast and memory-efficient mapper for short bisulfite sequencing reads.
|
2024-10-21 |
|
dnmtools
|
public |
dnmtools is a set of tools for analyzing DNA methylation data from bisulfite sequencing.
|
2024-10-21 |
|
diamond
|
public |
Accelerated BLAST compatible local sequence aligner
|
2024-10-21 |
|
pybbi
|
public |
Python bindings to UCSC Big Binary (bigWig/bigBed) file library
|
2024-10-21 |
|
bustools
|
public |
bustools is a program for manipulating BUS files for single cell RNA-Seq datasets.
|
2024-10-21 |
|
tesorter
|
public |
Lineage-level classification of transposable elements using conserved protein domains.
|
2024-10-21 |
|
fastq-dl
|
public |
A tool to download FASTQs associated with Study, Experiment, or Run accessions.
|
2024-10-21 |
|
pixelator
|
public |
A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) assays.
|
2024-10-21 |
|
centrifuge
|
public |
Classifier for metagenomic sequences. Supports classifier scripts
|
2024-10-21 |
|
sdeper
|
public |
Spatial Deconvolution method with Platform Effect Removal
|
2024-10-20 |
|
taxmyphage
|
public |
Script to assign taxonomy to a bacteriophage at the genus and species level
|
2024-10-20 |
|
gene-trajectory-python
|
public |
Compute gene trajectories
|
2024-10-19 |
|
mtgrasp
|
public |
reference-grade de novo animal mitochondrial genome assembly and standardization
|
2024-10-19 |
|
sevenbridges-python
|
public |
SBG API python client bindings
|
2024-10-19 |
|
cloudspades
|
public |
A module of the SPAdes assembler aimed at genome assembly from linked read technologies (10x, Tellseq, Haplotagging).
|
2024-10-18 |
|
qtlseq
|
public |
QTL-seq: pipeline to identify causative mutations responsible for a phenotype.
|
2024-10-18 |
|
mutmap
|
public |
MutMap: pipeline to identify causative mutations responsible for a phenotype.
|
2024-10-18 |
|
el_gato
|
public |
Perform Legionella pneumophila Sequence Based Typing (SBT) from short reads or assemblies.
|
2024-10-18 |
|
pyteomics
|
public |
A framework for proteomics data analysis.
|
2024-10-18 |
|
r-grain
|
public |
Probability propagation in graphical independence networks, also known as Bayesian networks or probabilistic expert systems.
|
2024-10-17 |
|
bactopia-py
|
public |
A Python package for working with Bactopia
|
2024-10-17 |
|
inmoose
|
public |
InMoose is the Integrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.
|
2024-10-17 |
|
biocode
|
public |
Bioinformatics code libraries and scripts
|
2024-10-17 |
|
rbpbench
|
public |
Evaluate CLIP-seq and other genomic region data using a comprehensive collection of known RBP binding motifs
|
2024-10-17 |
|
phyloacc
|
public |
Bayesian estimation of substitution rate shifts in non-coding regions
|
2024-10-17 |
|
umicollapse
|
public |
Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI).
|
2024-10-17 |
|
unassigner
|
public |
Type strain identification for 16S reads
|
2024-10-17 |
|
cmat
|
public |
ClinVar Mapping and Annotation Toolkit
|
2024-10-17 |
|
biobb_cmip
|
public |
Biobb_cmip is the Biobb module collection to compute classical molecular interaction potentials.
|
2024-10-17 |
|
vcf-validator
|
public |
EBI EVA - Validation tool for VCF file format compliance
|
2024-10-17 |
|
phanotate
|
public |
Phanotate gene caller for phages
|
2024-10-16 |
|
hatchet
|
public |
A package to infer allele and clone-specific copy-number aberrations (CNAs).
|
2024-10-16 |
|
pcaone
|
public |
PCAone - Principal Component Analysis All in One
|
2024-10-16 |
|
flexi-formatter
|
public |
Moving flexiplex barcode and UMI to bam tags
|
2024-10-16 |
|
msweep
|
public |
mSWEEP - bacterial community composition estimation from pseudoalignments
|
2024-10-16 |
|
pneumo-typer
|
public |
Pneumo-Typer: An integrated tool for simultaneous identification of serotype, sequence type, and capsule genotype in Streptococcus pneumoniae.
|
2024-10-16 |
