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tidk
|
public |
Identify and find telomeres, or telomeric repeats in a genome.
|
2024-10-04 |
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skder
|
public |
skDER & CiDDER: efficient & high-resolution dereplication methods for microbial genomes
|
2024-10-04 |
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lighter
|
public |
Lighter is a kmer-based error correction method for whole genome sequencing data
|
2024-10-03 |
|
tracs
|
public |
Tracs - Fast pairwise transmission inference from single genome and/or metagenomic data
|
2024-10-03 |
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pysradb
|
public |
Python package for retrieving metadata and downloading datasets from SRA/ENA/GEO
|
2024-10-03 |
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longreadsum
|
public |
Long read sequencing data quality control tool
|
2024-10-03 |
|
gxf2bed
|
public |
Fastest GTF/GFF-to-BED converter chilling around
|
2024-10-03 |
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strobealign
|
public |
Align short reads using dynamic seed size with strobemers
|
2024-10-03 |
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spec2vec
|
public |
Word2Vec based similarity measure of mass spectrometry data.
|
2024-10-03 |
|
verkko
|
public |
A hybrid genome assembly pipeline developed for telomere-to-telomere assembly of accurate (HiFi, ONT Duplex, ONT HERRO) and long (ONT UL) reads.
|
2024-10-03 |
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k8
|
public |
Lightweight JavaScript shell based on Google's V8 JavaScript engine
|
2024-10-03 |
|
rukki
|
public |
Extracting paths from assembly graphs.
|
2024-10-02 |
|
bactopia-teton
|
public |
Methods used by Bactopia for taxonomic classification
|
2024-10-02 |
|
piper
|
public |
A lightweight python toolkit for gluing together restartable, robust command line pipelines
|
2024-10-02 |
|
pyslow5
|
public |
slow5lib Python binding
|
2024-10-02 |
|
perl-convert-binary-c
|
public |
Binary Data Conversion using C Types
|
2024-10-02 |
|
metacache
|
public |
MetaCache is a classification system for mapping genomic sequences (short reads, long reads, contigs, ...) from metagenomic samples to their most likely taxon of origin.
|
2024-10-02 |
|
gappa
|
public |
Genesis Applications for Phylogenetic Placement Analysis
|
2024-10-02 |
|
hsdfinder
|
public |
a tool to predict highly similar duplicates (HSDs) in eukaryotes
|
2024-10-02 |
|
mhcflurry
|
public |
MHC Binding Predictor
|
2024-10-02 |
|
hsdecipher
|
public |
Pipeline for the downstream analysis of highly similar duplicate genes
|
2024-10-02 |
|
nohuman
|
public |
Remove human reads from a sequencing run
|
2024-10-02 |
|
bambamc
|
public |
lightweight C implementation of name collating BAM file input and BAM file output
|
2024-10-02 |
|
open-cravat
|
public |
OpenCRAVAT - variant analysis toolkit
|
2024-10-01 |
|
python-hivclustering
|
public |
A Python 3 library that makes inferences on HIV-1 transmission networks.
|
2024-10-01 |
|
genomic_address_service
|
public |
Genomic Address Service: De novo clustering and cluster address assignment
|
2024-10-01 |
|
eukulele
|
public |
Easy taxonomic annotation for eukaryotic microbes.
|
2024-10-01 |
|
peptide-shaker
|
public |
Independent platform for interpretation of proteomics identification results.
|
2024-10-01 |
|
searchgui
|
public |
User-friendly graphical tool for using proteomics identification search engines.
|
2024-10-01 |
|
minimizers
|
public |
Minimizers extraction from fasta files.
|
2024-10-01 |
|
sphae
|
public |
Phage toolkit
|
2024-10-01 |
|
olivar
|
public |
Olivar PCR tiling design
|
2024-10-01 |
|
dbghaplo
|
public |
Haplotyping small sequences from heterogeneous long-read sequencing samples with a SNP-encoded positional de Bruijn Graph.
|
2024-09-30 |
|
yahs
|
public |
YaHS, yet another Hi-C scaffolding tool.
|
2024-09-30 |
|
catfasta2phyml
|
public |
Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file
|
2024-09-30 |
|
spreadgltools
|
public |
Visualising pathogen dispersal in a high-performance browser application
|
2024-09-30 |
|
slow5tools
|
public |
Toolkit for S/bLOW5 format
|
2024-09-30 |
|
agfusion
|
public |
Python package to annotate and visualize gene fusions.
|
2024-09-30 |
|
r-diffcorr
|
public |
A method for identifying pattern changes between 2 experimental conditions in correlation networks (e.g., gene co-expression networks), which builds on a commonly used association measure, such as Pearson's correlation coefficient. This package includes functions to calculate correlation matrices for high-dimensional dataset and to test differential correlation, which means the changes in the correlation relationship among variables (e.g., genes and metabolites) between 2 experimental conditions.
|
2024-09-30 |
|
ont-modkit
|
public |
A bioinformatics tool for working with modified bases in Oxford Nanopore sequencing data.
|
2024-09-29 |
|
nanovar
|
public |
Structural variant caller using low-depth long reads
|
2024-09-29 |
|
metabuli
|
public |
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid
|
2024-09-29 |
|
quatradis
|
public |
A set of tools to analyse the output from TraDIS analyses
|
2024-09-29 |
|
genomedata
|
public |
Tools for accessing large amounts of genomic data
|
2024-09-29 |
|
snakeobjects
|
public |
Snakeobjects, an object-oriented workflow management system based on snakemake
|
2024-09-27 |
|
baltic
|
public |
Lightweight package for analyzing, manipulating and visualizing annotated phylogenetic trees.
|
2024-09-27 |
|
consensify
|
public |
A method for generating a consensus pseudohaploid genome sequence
|
2024-09-27 |
|
gbintk
|
public |
GraphBin-Tk: assembly graph-based metagenomic binning toolkit
|
2024-09-27 |
|
giatools
|
public |
Tools required for Galaxy Image Analysis
|
2024-09-27 |
|
msisensor-pro
|
public |
Microsatellite Instability (MSI) detection using high-throughput sequencing data.
|
2024-09-27 |
