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snakeobjects
|
public |
Snakeobjects, an object-oriented workflow management system based on snakemake
|
2024-09-27 |
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baltic
|
public |
Lightweight package for analyzing, manipulating and visualizing annotated phylogenetic trees.
|
2024-09-27 |
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consensify
|
public |
A method for generating a consensus pseudohaploid genome sequence
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2024-09-27 |
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gbintk
|
public |
GraphBin-Tk: assembly graph-based metagenomic binning toolkit
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2024-09-27 |
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giatools
|
public |
Tools required for Galaxy Image Analysis
|
2024-09-27 |
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msisensor-pro
|
public |
Microsatellite Instability (MSI) detection using high-throughput sequencing data.
|
2024-09-27 |
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fast-edit-distance
|
public |
A implementation of edit distance with improved runtime.
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2024-09-27 |
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trnascan-se
|
public |
tRNA detection in large-scale genomic sequences
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2024-09-27 |
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infernal
|
public |
Infernal is for searching DNA sequence databases for RNA structure and sequence similarities.
|
2024-09-27 |
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kmertools
|
public |
kmertools: DNA Vectorisation Tool
|
2024-09-27 |
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repic
|
public |
REPIC - an ensemble learning approach to cryo-EM particle picking.
|
2024-09-26 |
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gget
|
public |
gget enables efficient querying of genomic databases.
|
2024-09-26 |
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hopla
|
public |
Hopla enables classic genomic single, duo, trio, etc., analysis, by studying a single (multisample) vcf-file
|
2024-09-26 |
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architeuthis
|
public |
Tool to analyze and summarize data for Kraken.
|
2024-09-26 |
|
moni
|
public |
A Pangenomics Index for Finding MEMs
|
2024-09-26 |
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biobb_structure_checking
|
public |
BioBB_structure_checking performs MDWeb structure checking set as a command line utility.
|
2024-09-26 |
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metacoag
|
public |
MetaCoAG: Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
|
2024-09-26 |
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falco
|
public |
falco is a drop-in C++ implementation of FastQC to assess the quality of sequence reads.
|
2024-09-26 |
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graphbin2
|
public |
GraphBin2: Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs
|
2024-09-26 |
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squigulator
|
public |
A tool for simulating nanopore raw signal data
|
2024-09-26 |
|
abnumber
|
public |
AbNumber - Antibody numbering using ANARCI
|
2024-09-25 |
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vsnp3
|
public |
Rapidly call, validate, and compare SNPs from FASTQ files in a timely manner utilizing large data sets.
|
2024-09-25 |
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severus
|
public |
A tool for somatic structural variant calling using long reads
|
2024-09-25 |
|
srnamapper
|
public |
Mapping small RNA data to a genome.
|
2024-09-25 |
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ampliconsuite
|
public |
An end-to-end wrapper for focal amplification analysis from whole-genome sequencing using AmpliconArchitect and associated tools.
|
2024-09-25 |
|
ska2
|
public |
SKA (Split Kmer Analysis) version 2
|
2024-09-25 |
|
ena-upload-cli
|
public |
Command Line Interface to upload data to the European Nucleotide Archive
|
2024-09-25 |
|
hiphase
|
public |
Small and structural variant phasing tool for PacBio HiFi reads
|
2024-09-25 |
|
fiji-simple_omero_client
|
public |
Java library to simplify API to put/get objects on an OMERO server from Fiji/ImageJ.
|
2024-09-25 |
|
mview
|
public |
MView extracts and reformats the results of a sequence database search or multiple alignment.
|
2024-09-25 |
|
kallisto
|
public |
Quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads.
|
2024-09-25 |
|
recentrifuge
|
public |
Robust comparative analysis and contamination removal for metagenomics
|
2024-09-25 |
|
sansa
|
public |
Structural variant annotation
|
2024-09-25 |
|
hifiasm_meta
|
public |
Metagenome assembler for Hifi reads, based on hifiasm.
|
2024-09-24 |
|
prymer
|
public |
Python Primer Design Library
|
2024-09-24 |
|
planemo
|
public |
Command-line utilities to assist in building tools for the Galaxy project (http://galaxyproject.org/).
|
2024-09-24 |
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macs3
|
public |
Model Based Analysis for ChIP-Seq data.
|
2024-09-24 |
|
impg
|
public |
impg: implicit pangenome graphs
|
2024-09-24 |
|
msisensor-rna
|
public |
MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data.
|
2024-09-24 |
|
leviosam2
|
public |
Fast and accurate coordinate conversion between assemblies.
|
2024-09-24 |
|
expam
|
public |
Metagenomic profiling using a reference phylogeny
|
2024-09-24 |
|
mgatk
|
public |
Mitochondrial genome analysis toolkit.
|
2024-09-23 |
|
guidescan
|
public |
GuideScan is a tool for genome-wide CRISPR guide RNA (gRNA) design and analysis in custom genomes.
|
2024-09-23 |
|
vembrane
|
public |
Filter VCF/BCF files with Python expressions.
|
2024-09-23 |
|
macrel
|
public |
A pipeline for AMP (antimicrobial peptide) prediction
|
2024-09-23 |
|
tooldistillator
|
public |
Tool to extract and aggregate information from different tool outputs to JSON parsable files
|
2024-09-23 |
|
reneo
|
public |
Reneo: Unraveling Viral Genomes from Metagenomes
|
2024-09-23 |
|
checkm-genome
|
public |
Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes.
|
2024-09-23 |
|
gsearch
|
public |
gsearch is an ultra-fast and scalable microbial genome search program based on MinHash-like metrics and graph-based approximate nearest neighbor search
|
2024-09-23 |
|
bactopia
|
public |
Bactopia is a flexible pipeline for complete analysis of bacterial genomes.
|
2024-09-22 |
