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bioconductor-outrider
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public |
OUTRIDER - OUTlier in RNA-Seq fInDER
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2024-12-24 |
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bioconductor-scnorm
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public |
Normalization of single cell RNA-seq data
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2024-12-24 |
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bioconductor-switchde
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public |
Switch-like differential expression across single-cell trajectories
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2024-12-24 |
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bioconductor-recoup
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public |
An R package for the creation of complex genomic profile plots
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2024-12-24 |
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bioconductor-busseq
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public |
Batch Effect Correction with Unknow Subtypes for scRNA-seq data
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2024-12-24 |
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bioconductor-sitadela
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public |
An R package for the easy provision of simple but complete tab-delimited genomic annotation from a variety of sources and organisms
|
2024-12-24 |
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bioconductor-celltrails
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public |
Reconstruction, visualization and analysis of branching trajectories
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2024-12-24 |
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bioconductor-organismdbi
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public |
Software to enable the smooth interfacing of different database packages
|
2024-12-24 |
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bioconductor-speckle
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public |
Statistical methods for analysing single cell RNA-seq data
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2024-12-24 |
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bioconductor-proactiv
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public |
Estimate Promoter Activity from RNA-Seq data
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2024-12-24 |
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bioconductor-crlmm
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public |
Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays
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2024-12-24 |
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bioconductor-mbpcr
|
public |
Bayesian Piecewise Constant Regression for DNA copy number estimation
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2024-12-24 |
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bioconductor-genelendatabase
|
public |
Lengths of mRNA transcripts for a number of genomes
|
2024-12-24 |
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bioconductor-omicade4
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public |
Multiple co-inertia analysis of omics datasets
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2024-12-24 |
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bioconductor-bgeecall
|
public |
Automatic RNA-Seq present/absent gene expression calls generation
|
2024-12-24 |
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r-intlim
|
public |
Integration of Omics Data Using Linear Modeling
|
2024-12-24 |
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bioconductor-edirquery
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public |
Query the EDIR Database For Specific Gene
|
2024-12-24 |
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bioconductor-mygene
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public |
Access MyGene.Info_ services
|
2024-12-24 |
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bioconductor-hiccompare
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public |
HiCcompare: Joint normalization and comparative analysis of multiple Hi-C datasets
|
2024-12-24 |
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bioconductor-hicexperiment
|
public |
Bioconductor class for interacting with Hi-C files in R
|
2024-12-24 |
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bioconductor-omicplotr
|
public |
Visual Exploration of Omic Datasets Using a Shiny App
|
2024-12-24 |
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bioconductor-multistateqtl
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public |
Toolkit for the analysis of multi-state QTL data
|
2024-12-24 |
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r-eggnog
|
public |
EggNOG database annotations.
|
2024-12-24 |
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bioconductor-baalchip
|
public |
BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes
|
2024-12-24 |
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r-wormbase
|
public |
Fetch Caenorhabditis elegans genome annotations from WormBase.
|
2024-12-24 |
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bioconductor-mdts
|
public |
Detection of de novo deletion in targeted sequencing trios
|
2024-12-24 |
|
r-cellosaurus
|
public |
Cellosaurus identifier mapping toolkit.
|
2024-12-24 |
|
bioconductor-basicstarrseq
|
public |
Basic peak calling on STARR-seq data
|
2024-12-24 |
|
bioconductor-vplotr
|
public |
Set of tools to make V-plots and compute footprint profiles
|
2024-12-24 |
|
bioconductor-mgfr
|
public |
Marker Gene Finder in RNA-seq data
|
2024-12-24 |
|
r-rapidr
|
public |
Package to perform non-invasive fetal testing for aneuploidies using sequencing count data from cell-free DNA
|
2024-12-24 |
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bioconductor-txdbmaker
|
public |
Tools for making TxDb objects from genomic annotations
|
2024-12-24 |
|
bioconductor-pics
|
public |
Probabilistic inference of ChIP-seq
|
2024-12-24 |
|
r-pipette
|
public |
Pipette biological data in and out of R.
|
2024-12-24 |
|
bioconductor-organism.dplyr
|
public |
dplyr-based Access to Bioconductor Annotation Resources
|
2024-12-24 |
|
bioconductor-genomicfeatures
|
public |
Query the gene models of a given organism/assembly
|
2024-12-24 |
|
pdb2fasta
|
public |
Convert PDB structures to FASTA sequences.
|
2024-12-24 |
|
bioconductor-tcseq
|
public |
Time course sequencing data analysis
|
2024-12-24 |
|
r-exomedepth
|
public |
Calls copy number variants (CNVs) from targeted sequence data, typically exome sequencing experiments designed to identify the genetic basis of Mendelian disorders.
|
2024-12-24 |
|
bioconductor-crisprvariants
|
public |
Tools for counting and visualising mutations in a target location
|
2024-12-24 |
|
bioconductor-prebs
|
public |
Probe region expression estimation for RNA-seq data for improved microarray comparability
|
2024-12-24 |
|
bioconductor-breakpointr
|
public |
Find breakpoints in Strand-seq data
|
2024-12-24 |
|
bioconductor-aneufinder
|
public |
Analysis of Copy Number Variation in Single-Cell-Sequencing Data
|
2024-12-24 |
|
bioconductor-mosaics
|
public |
MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)
|
2024-12-24 |
|
bioconductor-qdnaseq.hg19
|
public |
QDNAseq bin annotation for hg19
|
2024-12-24 |
|
bioconductor-cfdnakit
|
public |
Fragmen-length analysis package from high-throughput sequencing of cell-free DNA (cfDNA)
|
2024-12-24 |
|
bioconductor-qdnaseq.mm10
|
public |
Bin annotation mm10
|
2024-12-24 |
|
alevin-fry
|
public |
alevin-fry is a tool for the efficient processing of single-cell data based on RAD files produced by alevin
|
2024-12-24 |
|
bioconductor-ace
|
public |
Absolute Copy Number Estimation from Low-coverage Whole Genome Sequencing
|
2024-12-24 |
|
bioconductor-genebreak
|
public |
Gene Break Detection
|
2024-12-24 |
