bioconda / packages / bioconductor-outrider 1.6.0

OUTRIDER - OUTlier in RNA-Seq fInDER

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.6.0
  • osx-64  v1.6.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-outrider
conda install -c bioconda/label/gcc7 bioconductor-outrider

Description

Identification of aberrant gene expression in RNA-seq data. Read count expectations are modeled by an autoencoder to control for confounders in the data. Given these expectations, the RNA-seq read counts are assumed to follow a negative binomial distribution with a gene-specific dispersion. Outliers are then identified as read counts that significantly deviate from this distribution. Furthermore, OUTRIDER provides useful plotting functions to analyze and visualize the results.

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