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bioconductor-bgeecall

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Automatic RNA-Seq present/absent gene expression calls generation

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-bgeecall

Usage Tracking

1.22.0
1.18.1
1.16.0
1.14.0
1.10.0
5 / 8 versions selected
Total downloads: 0

Description

BgeeCall allows to generate present/absent gene expression calls without using an arbitrary cutoff like TPM<1. Calls are generated based on reference intergenic sequences. These sequences are generated based on expression of all RNA-Seq libraries of each species integrated in Bgee (https://bgee.org).

About

Summary

Automatic RNA-Seq present/absent gene expression calls generation

Information Last Updated

Apr 22, 2025 at 15:29

License

GPL-3 + file LICENSE

Total Downloads

18.5K

Platforms

noarch Version: 1.22.0