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bioconductor-hicexperiment

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Bioconductor class for interacting with Hi-C files in R

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-hicexperiment

Usage Tracking

1.6.0
1.2.0
1.0.0
3 / 8 versions selected
Downloads (Last 6 months): 0

Description

R generic interface to Hi-C contact matrices in .(m)cool, .hic or HiC-Pro derived formats, as well as other Hi-C processed file formats. Contact matrices can be partially parsed using a random access method, allowing a memory-efficient representation of Hi-C data in R. The HiCExperiment class stores the Hi-C contacts parsed from local contact matrix files. HiCExperiment instances can be further investigated in R using the HiContacts analysis package.

About

Summary

Bioconductor class for interacting with Hi-C files in R

Last Updated

Dec 24, 2024 at 17:08

License

MIT + file LICENSE

Total Downloads

2.9K

Supported Platforms

noarch