bioconda / packages / bioconductor-recoup 1.22.0

An R package for the creation of complex genomic profile plots

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.8.0
  • osx-64  v1.8.0
  • noarch  v1.22.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-recoup
conda install -c bioconda/label/gcc7 bioconductor-recoup
conda install -c bioconda/label/cf201901 bioconductor-recoup

Description

recoup calculates and plots signal profiles created from short sequence reads derived from Next Generation Sequencing technologies. The profiles provided are either sumarized curve profiles or heatmap profiles. Currently, recoup supports genomic profile plots for reads derived from ChIP-Seq and RNA-Seq experiments. The package uses ggplot2 and ComplexHeatmap graphics facilities for curve and heatmap coverage profiles respectively.


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