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bioconda / packages / bioconductor-genomicfeatures 1.54.1

Conveniently import and query gene models

Installers

Info: This package contains files in non-standard labels.
  • linux-64 v1.32.3
  • osx-64 v1.32.3
  • noarch v1.54.1

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-genomicfeatures
conda install bioconda/label/cf201901::bioconductor-genomicfeatures
conda install bioconda/label/gcc7::bioconductor-genomicfeatures

Description

A set of tools and methods for making and manipulating transcript centric annotations. With these tools the user can easily download the genomic locations of the transcripts, exons and cds of a given organism, from either the UCSC Genome Browser or a BioMart database (more sources will be supported in the future). This information is then stored in a local database that keeps track of the relationship between transcripts, exons, cds and genes. Flexible methods are provided for extracting the desired features in a convenient format.


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