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bioconda / packages / clair3

Clair3 is a small variant caller for long-reads. Compare to PEPPER (r0.4), Clair3 (v0.1) shows a better SNP F1-score with ≤30-fold of ONT data (precisionFDA Truth Challenge V2), and a better Indel F1-score, while runs generally four times faster. Clair3 makes the best of both worlds of using pileup or full-alignment as input for deep-learning based long-read small variant calling. Clair3 is simple and modular for easy deployment and integration.

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Type Size Name Uploaded Downloads Labels
conda 208.5 MB | linux-64/clair3-1.0.11-py39hd649744_0.tar.bz2  13 days and 23 hours ago 204 main
conda 208.5 MB | linux-64/clair3-1.0.10-py39hd649744_1.tar.bz2  3 months and 15 days ago 847 main
conda 208.4 MB | linux-64/clair3-1.0.10-py39h46983ab_0.tar.bz2  8 months and 6 days ago 1403 main
conda 208.3 MB | linux-64/clair3-1.0.8-py39h46983ab_2.tar.bz2  9 months and 22 days ago 380 main
conda 208.3 MB | linux-64/clair3-1.0.8-py39hf5e1c6e_1.tar.bz2  10 months and 25 days ago 1022 main
conda 208.4 MB | linux-64/clair3-1.0.8-py39hf5e1c6e_0.tar.bz2  11 months and 3 days ago 209 main
conda 208.3 MB | linux-64/clair3-1.0.7-py39hf5e1c6e_1.tar.bz2  11 months and 9 days ago 785 main
conda 208.2 MB | linux-64/clair3-1.0.7-py39hf5e1c6e_0.tar.bz2  11 months and 26 days ago 295 main
conda 201.6 MB | linux-64/clair3-1.0.6-py39hf5e1c6e_0.tar.bz2  1 year and 19 days ago 865 main
conda 201.5 MB | linux-64/clair3-1.0.5-py39hf5e1c6e_0.tar.bz2  1 year and 3 months ago 1213 main
conda 201.5 MB | linux-64/clair3-1.0.4-py39hf5e1c6e_3.tar.bz2  1 year and 5 months ago 1376 main
conda 201.6 MB | linux-64/clair3-1.0.4-py39hf5e1c6e_2.tar.bz2  1 year and 7 months ago 452 main
conda 201.5 MB | linux-64/clair3-1.0.4-py39hf5e1c6e_1.tar.bz2  1 year and 8 months ago 303 main
conda 201.6 MB | linux-64/clair3-1.0.4-py39hf5e1c6e_0.tar.bz2  1 year and 8 months ago 125 main
conda 201.5 MB | linux-64/clair3-1.0.3-py39h8492097_0.tar.bz2  1 year and 9 months ago 1589 main
conda 201.5 MB | linux-64/clair3-1.0.2-py39hb9dc472_0.tar.bz2  1 year and 10 months ago 1592 main
conda 142.2 MB | linux-64/clair3-1.0.1-py39hb9dc472_0.tar.bz2  1 year and 11 months ago 1617 main
conda 142.2 MB | linux-64/clair3-1.0.0-py39hb9dc472_1.tar.bz2  2 years and 20 days ago 1751 main
conda 142.2 MB | linux-64/clair3-1.0.0-py39hb9dc472_0.tar.bz2  2 years and 28 days ago 189 main
conda 142.2 MB | linux-64/clair3-0.1.12-py39hb9dc472_6.tar.bz2  2 years and 6 months ago 2739 main
conda 142.3 MB | linux-64/clair3-0.1.12-py39hb9dc472_5.tar.bz2  2 years and 6 months ago 192 main
conda 142.3 MB | linux-64/clair3-0.1.12-py39hb9dc472_4.tar.bz2  2 years and 7 months ago 329 main
conda 142.3 MB | linux-64/clair3-0.1.12-py39hb9dc472_2.tar.bz2  2 years and 7 months ago 163 main
conda 142.3 MB | linux-64/clair3-0.1.12-py39hb9dc472_1.tar.bz2  2 years and 7 months ago 184 main
conda 142.3 MB | linux-64/clair3-0.1.12-py39hb9dc472_0.tar.bz2  2 years and 7 months ago 169 main
conda 145.4 MB | linux-64/clair3-0.1.11-py36hb9dc472_6.tar.bz2  2 years and 9 months ago 2694 main
conda 145.3 MB | linux-64/clair3-0.1.11-py36hb9dc472_5.tar.bz2  2 years and 10 months ago 500 main
conda 145.2 MB | linux-64/clair3-0.1.11-py36hb9dc472_4.tar.bz2  2 years and 11 months ago 370 main
conda 145.2 MB | linux-64/clair3-0.1.11-py36hb9dc472_3.tar.bz2  2 years and 11 months ago 174 main
conda 145.2 MB | linux-64/clair3-0.1.11-py36hb9dc472_2.tar.bz2  2 years and 11 months ago 204 main
conda 145.1 MB | linux-64/clair3-0.1.11-py36hb9dc472_1.tar.bz2  2 years and 11 months ago 217 main
conda 145.3 MB | linux-64/clair3-0.1.11-py36hb9dc472_0.tar.bz2  2 years and 11 months ago 191 main
conda 140.7 MB | noarch/clair3-0.1.10-hdfd78af_0.tar.bz2  3 years and 2 months ago 2336 main
conda 140.8 MB | noarch/clair3-0.1.9-hdfd78af_0.tar.bz2  3 years and 4 months ago 2459 main
conda 140.8 MB | noarch/clair3-0.1.8-hdfd78af_0.tar.bz2  3 years and 4 months ago 2563 main
conda 140.8 MB | noarch/clair3-0.1.7-hdfd78af_0.tar.bz2  3 years and 5 months ago 2657 main
conda 140.8 MB | noarch/clair3-0.1.6-hdfd78af_0.tar.bz2  3 years and 6 months ago 2782 main
conda 140.8 MB | noarch/clair3-0.1.5-hdfd78af_0.tar.bz2  3 years and 8 months ago 2766 main
conda 140.8 MB | noarch/clair3-0.1.4.2-hdfd78af_0.tar.bz2  3 years and 9 months ago 2645 main
conda 140.8 MB | noarch/clair3-0.1.4.1-hdfd78af_0.tar.bz2  3 years and 9 months ago 2572 main
conda 140.8 MB | noarch/clair3-0.1.4-hdfd78af_0.tar.bz2  3 years and 9 months ago 2608 main
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