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Facilitates easy manipulation of variant call format (VCF) data. Functions are provided to rapidly read from and write to VCF files. Once VCF data is read into R a parser function extracts matrices of data. This information can then be used for quality control or other purposes. Additional functions provide visualization of genomic data. Once processing is complete data may be written to a VCF file (*.vcf.gz). It also may be converted into other popular R objects (e.g., genlight, DNAbin). VcfR provides a link between VCF data and familiar R software.

copied from cf-staging / r-vcfr
Type Size Name Uploaded Downloads Labels
conda 1.7 MB | win-64/r-vcfr-1.15.0-r43hee0745d_1.conda  6 months and 11 days ago 331 main
conda 1.7 MB | win-64/r-vcfr-1.15.0-r44hee0745d_1.conda  6 months and 11 days ago 328 main
conda 1.6 MB | osx-64/r-vcfr-1.15.0-r44hfba2881_1.conda  6 months and 11 days ago 293 main
conda 1.6 MB | osx-64/r-vcfr-1.15.0-r43hfba2881_1.conda  6 months and 11 days ago 324 main
conda 1.7 MB | linux-64/r-vcfr-1.15.0-r43h92ba465_1.conda  6 months and 11 days ago 1111 main
conda 1.7 MB | linux-64/r-vcfr-1.15.0-r44h92ba465_1.conda  6 months and 11 days ago 974 main
conda 1.7 MB | win-64/r-vcfr-1.15.0-r41h67098fc_0.conda  1 year and 1 month ago 450 main
conda 1.6 MB | osx-64/r-vcfr-1.15.0-r42hd6ad0b9_0.conda  1 year and 1 month ago 344 main
conda 1.6 MB | osx-64/r-vcfr-1.15.0-r43hd6ad0b9_0.conda  1 year and 1 month ago 391 main
conda 1.7 MB | linux-64/r-vcfr-1.15.0-r43h33b523d_0.conda  1 year and 1 month ago 1970 main
conda 1.6 MB | linux-64/r-vcfr-1.15.0-r42h33b523d_0.conda  1 year and 1 month ago 1567 main
conda 1.7 MB | win-64/r-vcfr-1.14.0-r41h67098fc_1.conda  1 year and 7 months ago 545 main
conda 1.6 MB | osx-64/r-vcfr-1.14.0-r43ha73a074_1.conda  1 year and 7 months ago 360 main
conda 1.6 MB | osx-64/r-vcfr-1.14.0-r42ha73a074_1.conda  1 year and 7 months ago 326 main
conda 1.7 MB | linux-64/r-vcfr-1.14.0-r43h33b523d_1.conda  1 year and 7 months ago 1666 main
conda 1.7 MB | linux-64/r-vcfr-1.14.0-r42h33b523d_1.conda  1 year and 7 months ago 1602 main
conda 1.7 MB | win-64/r-vcfr-1.14.0-r41h67098fc_0.conda  1 year and 11 months ago 690 main
conda 1.6 MB | osx-64/r-vcfr-1.14.0-r41h32f0767_0.conda  1 year and 11 months ago 329 main
conda 1.6 MB | osx-64/r-vcfr-1.14.0-r42h32f0767_0.conda  1 year and 11 months ago 327 main
conda 1.7 MB | linux-64/r-vcfr-1.14.0-r41h58bca29_0.conda  1 year and 11 months ago 2416 main
conda 1.7 MB | linux-64/r-vcfr-1.14.0-r42h58bca29_0.conda  1 year and 11 months ago 1922 main
conda 1.5 MB | win-64/r-vcfr-1.13.0-r41h67098fc_1.tar.bz2  2 years and 3 months ago 528 main
conda 1.5 MB | osx-64/r-vcfr-1.13.0-r41h32f0767_1.tar.bz2  2 years and 3 months ago 75 main
conda 1.5 MB | osx-64/r-vcfr-1.13.0-r42h32f0767_1.tar.bz2  2 years and 3 months ago 81 main
conda 1.5 MB | linux-64/r-vcfr-1.13.0-r41h690469d_1.tar.bz2  2 years and 3 months ago 1840 main
conda 1.5 MB | linux-64/r-vcfr-1.13.0-r42h690469d_1.tar.bz2  2 years and 3 months ago 2095 main
conda 1.6 MB | win-64/r-vcfr-1.13.0-r40h67098fc_0.tar.bz2  2 years and 6 months ago 661 main
conda 1.5 MB | win-64/r-vcfr-1.13.0-r41h67098fc_0.tar.bz2  2 years and 6 months ago 635 main
conda 1.5 MB | osx-64/r-vcfr-1.13.0-r41h3b3474e_0.tar.bz2  2 years and 6 months ago 78 main
conda 1.5 MB | osx-64/r-vcfr-1.13.0-r40h3b3474e_0.tar.bz2  2 years and 6 months ago 79 main
conda 1.5 MB | linux-64/r-vcfr-1.13.0-r40h690469d_0.tar.bz2  2 years and 6 months ago 2993 main
conda 1.5 MB | linux-64/r-vcfr-1.13.0-r41h690469d_0.tar.bz2  2 years and 6 months ago 2053 main
conda 1.8 MB | win-64/r-vcfr-1.12.0-r41h67098fc_0.tar.bz2  3 years and 8 months ago 815 main
conda 1.8 MB | win-64/r-vcfr-1.12.0-r40h67098fc_0.tar.bz2  3 years and 8 months ago 805 main
conda 1.7 MB | osx-64/r-vcfr-1.12.0-r40h49af105_0.tar.bz2  3 years and 8 months ago 143 main
conda 1.7 MB | osx-64/r-vcfr-1.12.0-r41h49af105_0.tar.bz2  3 years and 8 months ago 197 main
conda 1.8 MB | linux-64/r-vcfr-1.12.0-r41h8380222_0.tar.bz2  3 years and 8 months ago 3029 main
conda 1.8 MB | linux-64/r-vcfr-1.12.0-r40h8380222_0.tar.bz2  3 years and 8 months ago 2562 main
conda 1.8 MB | win-64/r-vcfr-1.12.0-r40h30cfbe8_0.tar.bz2  4 years and 4 months ago 1023 main
conda 1.7 MB | osx-64/r-vcfr-1.12.0-r36hb3ae1ca_0.tar.bz2  4 years and 4 months ago 325 main
conda 1.8 MB | win-64/r-vcfr-1.12.0-r36h30cfbe8_0.tar.bz2  4 years and 4 months ago 1024 main
conda 1.7 MB | osx-64/r-vcfr-1.12.0-r40hb3ae1ca_0.tar.bz2  4 years and 4 months ago 351 main
conda 1.8 MB | linux-64/r-vcfr-1.12.0-r40h8ab0226_0.tar.bz2  4 years and 4 months ago 2917 main
conda 1.7 MB | linux-64/r-vcfr-1.12.0-r36h8ab0226_0.tar.bz2  4 years and 4 months ago 3390 main
conda 1.7 MB | win-64/r-vcfr-1.10.0-r36h30cfbe8_1.tar.bz2  4 years and 8 months ago 1032 main
conda 1.8 MB | win-64/r-vcfr-1.10.0-r40h30cfbe8_1.tar.bz2  4 years and 8 months ago 1035 main
conda 1.7 MB | osx-64/r-vcfr-1.10.0-r36h85a918d_1.tar.bz2  4 years and 8 months ago 324 main
conda 1.8 MB | osx-64/r-vcfr-1.10.0-r40h85a918d_1.tar.bz2  4 years and 8 months ago 336 main
conda 1.7 MB | linux-64/r-vcfr-1.10.0-r36h8ab0226_1.tar.bz2  4 years and 8 months ago 3043 main
conda 1.8 MB | linux-64/r-vcfr-1.10.0-r40h8ab0226_1.tar.bz2  4 years and 8 months ago 3036 main

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