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Facilitates easy manipulation of variant call format (VCF) data. Functions are provided to rapidly read from and write to VCF files. Once VCF data is read into R a parser function extracts matrices of data. This information can then be used for quality control or other purposes. Additional functions provide visualization of genomic data. Once processing is complete data may be written to a VCF file (*.vcf.gz). It also may be converted into other popular R objects (e.g., genlight, DNAbin). VcfR provides a link between VCF data and familiar R software.

copied from cf-staging / r-vcfr
Type Size Name Uploaded Downloads Labels
conda 1.7 MB | win-64/r-vcfr-1.15.0-r43hee0745d_1.conda  4 months and 22 days ago 201 main
conda 1.7 MB | win-64/r-vcfr-1.15.0-r44hee0745d_1.conda  4 months and 22 days ago 214 main
conda 1.6 MB | osx-64/r-vcfr-1.15.0-r44hfba2881_1.conda  4 months and 22 days ago 199 main
conda 1.6 MB | osx-64/r-vcfr-1.15.0-r43hfba2881_1.conda  4 months and 22 days ago 220 main
conda 1.7 MB | linux-64/r-vcfr-1.15.0-r43h92ba465_1.conda  4 months and 22 days ago 848 main
conda 1.7 MB | linux-64/r-vcfr-1.15.0-r44h92ba465_1.conda  4 months and 22 days ago 716 main
conda 1.7 MB | win-64/r-vcfr-1.15.0-r41h67098fc_0.conda  1 year and 3 days ago 318 main
conda 1.6 MB | osx-64/r-vcfr-1.15.0-r42hd6ad0b9_0.conda  1 year and 3 days ago 244 main
conda 1.6 MB | osx-64/r-vcfr-1.15.0-r43hd6ad0b9_0.conda  1 year and 3 days ago 295 main
conda 1.7 MB | linux-64/r-vcfr-1.15.0-r43h33b523d_0.conda  1 year and 3 days ago 1666 main
conda 1.6 MB | linux-64/r-vcfr-1.15.0-r42h33b523d_0.conda  1 year and 3 days ago 1261 main
conda 1.7 MB | win-64/r-vcfr-1.14.0-r41h67098fc_1.conda  1 year and 5 months ago 434 main
conda 1.6 MB | osx-64/r-vcfr-1.14.0-r43ha73a074_1.conda  1 year and 5 months ago 252 main
conda 1.6 MB | osx-64/r-vcfr-1.14.0-r42ha73a074_1.conda  1 year and 5 months ago 236 main
conda 1.7 MB | linux-64/r-vcfr-1.14.0-r43h33b523d_1.conda  1 year and 5 months ago 1448 main
conda 1.7 MB | linux-64/r-vcfr-1.14.0-r42h33b523d_1.conda  1 year and 5 months ago 1399 main
conda 1.7 MB | win-64/r-vcfr-1.14.0-r41h67098fc_0.conda  1 year and 10 months ago 564 main
conda 1.6 MB | osx-64/r-vcfr-1.14.0-r41h32f0767_0.conda  1 year and 10 months ago 226 main
conda 1.6 MB | osx-64/r-vcfr-1.14.0-r42h32f0767_0.conda  1 year and 10 months ago 231 main
conda 1.7 MB | linux-64/r-vcfr-1.14.0-r41h58bca29_0.conda  1 year and 10 months ago 2126 main
conda 1.7 MB | linux-64/r-vcfr-1.14.0-r42h58bca29_0.conda  1 year and 10 months ago 1705 main
conda 1.5 MB | win-64/r-vcfr-1.13.0-r41h67098fc_1.tar.bz2  2 years and 1 month ago 525 main
conda 1.5 MB | osx-64/r-vcfr-1.13.0-r41h32f0767_1.tar.bz2  2 years and 1 month ago 74 main
conda 1.5 MB | osx-64/r-vcfr-1.13.0-r42h32f0767_1.tar.bz2  2 years and 1 month ago 80 main
conda 1.5 MB | linux-64/r-vcfr-1.13.0-r41h690469d_1.tar.bz2  2 years and 1 month ago 1700 main
conda 1.5 MB | linux-64/r-vcfr-1.13.0-r42h690469d_1.tar.bz2  2 years and 1 month ago 1942 main
conda 1.6 MB | win-64/r-vcfr-1.13.0-r40h67098fc_0.tar.bz2  2 years and 4 months ago 658 main
conda 1.5 MB | win-64/r-vcfr-1.13.0-r41h67098fc_0.tar.bz2  2 years and 4 months ago 631 main
conda 1.5 MB | osx-64/r-vcfr-1.13.0-r41h3b3474e_0.tar.bz2  2 years and 4 months ago 77 main
conda 1.5 MB | osx-64/r-vcfr-1.13.0-r40h3b3474e_0.tar.bz2  2 years and 4 months ago 79 main
conda 1.5 MB | linux-64/r-vcfr-1.13.0-r40h690469d_0.tar.bz2  2 years and 4 months ago 2847 main
conda 1.5 MB | linux-64/r-vcfr-1.13.0-r41h690469d_0.tar.bz2  2 years and 4 months ago 1902 main
conda 1.8 MB | win-64/r-vcfr-1.12.0-r41h67098fc_0.tar.bz2  3 years and 6 months ago 811 main
conda 1.8 MB | win-64/r-vcfr-1.12.0-r40h67098fc_0.tar.bz2  3 years and 6 months ago 801 main
conda 1.7 MB | osx-64/r-vcfr-1.12.0-r40h49af105_0.tar.bz2  3 years and 6 months ago 143 main
conda 1.7 MB | osx-64/r-vcfr-1.12.0-r41h49af105_0.tar.bz2  3 years and 6 months ago 197 main
conda 1.8 MB | linux-64/r-vcfr-1.12.0-r41h8380222_0.tar.bz2  3 years and 6 months ago 2887 main
conda 1.8 MB | linux-64/r-vcfr-1.12.0-r40h8380222_0.tar.bz2  3 years and 6 months ago 2423 main
conda 1.8 MB | win-64/r-vcfr-1.12.0-r40h30cfbe8_0.tar.bz2  4 years and 3 months ago 1020 main
conda 1.7 MB | osx-64/r-vcfr-1.12.0-r36hb3ae1ca_0.tar.bz2  4 years and 3 months ago 325 main
conda 1.8 MB | win-64/r-vcfr-1.12.0-r36h30cfbe8_0.tar.bz2  4 years and 3 months ago 1021 main
conda 1.7 MB | osx-64/r-vcfr-1.12.0-r40hb3ae1ca_0.tar.bz2  4 years and 3 months ago 350 main
conda 1.8 MB | linux-64/r-vcfr-1.12.0-r40h8ab0226_0.tar.bz2  4 years and 3 months ago 2773 main
conda 1.7 MB | linux-64/r-vcfr-1.12.0-r36h8ab0226_0.tar.bz2  4 years and 3 months ago 3231 main
conda 1.7 MB | win-64/r-vcfr-1.10.0-r36h30cfbe8_1.tar.bz2  4 years and 7 months ago 1028 main
conda 1.8 MB | win-64/r-vcfr-1.10.0-r40h30cfbe8_1.tar.bz2  4 years and 7 months ago 1032 main
conda 1.7 MB | osx-64/r-vcfr-1.10.0-r36h85a918d_1.tar.bz2  4 years and 7 months ago 324 main
conda 1.8 MB | osx-64/r-vcfr-1.10.0-r40h85a918d_1.tar.bz2  4 years and 7 months ago 336 main
conda 1.7 MB | linux-64/r-vcfr-1.10.0-r36h8ab0226_1.tar.bz2  4 years and 7 months ago 2900 main
conda 1.8 MB | linux-64/r-vcfr-1.10.0-r40h8ab0226_1.tar.bz2  4 years and 7 months ago 2894 main

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