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conda-forge / packages / r-sctransform

A normalization method for single-cell UMI count data using a variance stabilizing transformation. The transformation is based on a negative binomial regression model with regularized parameters. As part of the same regression framework, this package also provides functions for batch correction, and data correction. See Hafemeister and Satija 2019 <doi:10.1101/576827> for more details.

copied from cf-staging / r-sctransform

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Type Size Name Uploaded Downloads Labels
conda 502.2 kB | win-64/r-sctransform-0.4.1-r43h3dc9324_1.conda  7 months and 12 days ago 509 main
conda 490.2 kB | win-64/r-sctransform-0.4.1-r44h3dc9324_1.conda  7 months and 12 days ago 400 main
conda 496.5 kB | linux-aarch64/r-sctransform-0.4.1-r44h5da6ed8_1.conda  7 months and 12 days ago 274 main
conda 512.1 kB | osx-arm64/r-sctransform-0.4.1-r43ha5f4c64_1.conda  7 months and 12 days ago 507 main
conda 499.3 kB | osx-arm64/r-sctransform-0.4.1-r44ha5f4c64_1.conda  7 months and 12 days ago 576 main
conda 514.4 kB | linux-ppc64le/r-sctransform-0.4.1-r43hee1cfac_1.conda  7 months and 12 days ago 236 main
conda 502.1 kB | osx-64/r-sctransform-0.4.1-r44hec4e08c_1.conda  7 months and 12 days ago 382 main
conda 515.7 kB | osx-64/r-sctransform-0.4.1-r43hec4e08c_1.conda  7 months and 12 days ago 506 main
conda 502.7 kB | linux-ppc64le/r-sctransform-0.4.1-r44hee1cfac_1.conda  7 months and 12 days ago 227 main
conda 508.7 kB | linux-aarch64/r-sctransform-0.4.1-r43h5da6ed8_1.conda  7 months and 12 days ago 327 main
conda 515.2 kB | linux-64/r-sctransform-0.4.1-r43hb424bfc_1.conda  7 months and 12 days ago 7550 main
conda 502.5 kB | linux-64/r-sctransform-0.4.1-r44hb424bfc_1.conda  7 months and 12 days ago 4439 main
conda 511.5 kB | linux-ppc64le/r-sctransform-0.4.1-r43hfc38db2_0.conda  1 year and 4 months ago 140 main
conda 500.3 kB | win-64/r-sctransform-0.4.1-r41h78deb2a_0.conda  1 year and 4 months ago 692 main
conda 512.2 kB | linux-ppc64le/r-sctransform-0.4.1-r42hfc38db2_0.conda  1 year and 4 months ago 164 main
conda 505.5 kB | osx-arm64/r-sctransform-0.4.1-r43h68b3a90_0.conda  1 year and 4 months ago 692 main
conda 505.5 kB | osx-arm64/r-sctransform-0.4.1-r42h68b3a90_0.conda  1 year and 4 months ago 503 main
conda 513.9 kB | osx-64/r-sctransform-0.4.1-r43h86da9ac_0.conda  1 year and 4 months ago 599 main
conda 513.2 kB | osx-64/r-sctransform-0.4.1-r42h86da9ac_0.conda  1 year and 4 months ago 486 main
conda 511.0 kB | linux-64/r-sctransform-0.4.1-r42h08d816e_0.conda  1 year and 4 months ago 6469 main
conda 510.9 kB | linux-64/r-sctransform-0.4.1-r43h08d816e_0.conda  1 year and 4 months ago 8496 main
conda 504.4 kB | linux-aarch64/r-sctransform-0.4.1-r43h003610b_0.conda  1 year and 4 months ago 203 main
conda 505.5 kB | linux-aarch64/r-sctransform-0.4.1-r42h003610b_0.conda  1 year and 4 months ago 158 main
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