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conda-forge / packages / r-sctransform

A normalization method for single-cell UMI count data using a variance stabilizing transformation. The transformation is based on a negative binomial regression model with regularized parameters. As part of the same regression framework, this package also provides functions for batch correction, and data correction. See Hafemeister and Satija 2019 <doi:10.1101/576827> for more details.

copied from cf-post-staging / r-sctransform

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Type Size Name Uploaded Downloads Labels
conda 493.8 kB | win-64/r-sctransform-0.4.2-r44hec15cfb_0.conda  28 days and 15 hours ago 44 main
conda 505.9 kB | win-64/r-sctransform-0.4.2-r43hec15cfb_0.conda  28 days and 15 hours ago 27 main
conda 513.9 kB | osx-arm64/r-sctransform-0.4.2-r43hb5716f2_0.conda  28 days and 15 hours ago 53 main
conda 506.2 kB | osx-64/r-sctransform-0.4.2-r44h8d9e291_0.conda  28 days and 15 hours ago 41 main
conda 501.3 kB | linux-aarch64/r-sctransform-0.4.2-r44h36ba1ed_0.conda  28 days and 15 hours ago 52 main
conda 513.4 kB | linux-aarch64/r-sctransform-0.4.2-r43h36ba1ed_0.conda  28 days and 15 hours ago 61 main
conda 502.0 kB | osx-arm64/r-sctransform-0.4.2-r44hb5716f2_0.conda  28 days and 15 hours ago 83 main
conda 517.6 kB | osx-64/r-sctransform-0.4.2-r43h8d9e291_0.conda  28 days and 15 hours ago 55 main
conda 519.2 kB | linux-64/r-sctransform-0.4.2-r43hc2d650c_0.conda  28 days and 15 hours ago 1075 main
conda 508.2 kB | linux-ppc64le/r-sctransform-0.4.2-r44he940c2a_0.conda  28 days and 15 hours ago 7 main
conda 519.8 kB | linux-ppc64le/r-sctransform-0.4.2-r43he940c2a_0.conda  28 days and 15 hours ago 10 main
conda 506.7 kB | linux-64/r-sctransform-0.4.2-r44hc2d650c_0.conda  28 days and 15 hours ago 1300 main
conda 502.2 kB | win-64/r-sctransform-0.4.1-r43h3dc9324_1.conda  10 months and 10 days ago 544 main
conda 490.2 kB | win-64/r-sctransform-0.4.1-r44h3dc9324_1.conda  10 months and 10 days ago 459 main
conda 496.5 kB | linux-aarch64/r-sctransform-0.4.1-r44h5da6ed8_1.conda  10 months and 10 days ago 311 main
conda 512.1 kB | osx-arm64/r-sctransform-0.4.1-r43ha5f4c64_1.conda  10 months and 10 days ago 574 main
conda 499.3 kB | osx-arm64/r-sctransform-0.4.1-r44ha5f4c64_1.conda  10 months and 10 days ago 707 main
conda 514.4 kB | linux-ppc64le/r-sctransform-0.4.1-r43hee1cfac_1.conda  10 months and 10 days ago 248 main
conda 502.1 kB | osx-64/r-sctransform-0.4.1-r44hec4e08c_1.conda  10 months and 10 days ago 450 main
conda 515.7 kB | osx-64/r-sctransform-0.4.1-r43hec4e08c_1.conda  10 months and 10 days ago 578 main
conda 502.7 kB | linux-ppc64le/r-sctransform-0.4.1-r44hee1cfac_1.conda  10 months and 10 days ago 240 main
conda 508.7 kB | linux-aarch64/r-sctransform-0.4.1-r43h5da6ed8_1.conda  10 months and 10 days ago 412 main
conda 515.2 kB | linux-64/r-sctransform-0.4.1-r43hb424bfc_1.conda  10 months and 10 days ago 9663 main
conda 502.5 kB | linux-64/r-sctransform-0.4.1-r44hb424bfc_1.conda  10 months and 10 days ago 6562 main
conda 511.5 kB | linux-ppc64le/r-sctransform-0.4.1-r43hfc38db2_0.conda  1 year and 7 months ago 142 main
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