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conda-forge / packages / r-sctransform

A normalization method for single-cell UMI count data using a variance stabilizing transformation. The transformation is based on a negative binomial regression model with regularized parameters. As part of the same regression framework, this package also provides functions for batch correction, and data correction. See Hafemeister and Satija 2019 <doi:10.1101/576827> for more details.

copied from cf-staging / r-sctransform

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Type Size Name Uploaded Downloads Labels
conda 502.2 kB | win-64/r-sctransform-0.4.1-r43h3dc9324_1.conda  7 months and 12 days ago 509 main
conda 490.2 kB | win-64/r-sctransform-0.4.1-r44h3dc9324_1.conda  7 months and 12 days ago 400 main
conda 496.5 kB | linux-aarch64/r-sctransform-0.4.1-r44h5da6ed8_1.conda  7 months and 12 days ago 274 main
conda 512.1 kB | osx-arm64/r-sctransform-0.4.1-r43ha5f4c64_1.conda  7 months and 12 days ago 507 main
conda 499.3 kB | osx-arm64/r-sctransform-0.4.1-r44ha5f4c64_1.conda  7 months and 12 days ago 576 main
conda 514.4 kB | linux-ppc64le/r-sctransform-0.4.1-r43hee1cfac_1.conda  7 months and 12 days ago 236 main
conda 502.1 kB | osx-64/r-sctransform-0.4.1-r44hec4e08c_1.conda  7 months and 12 days ago 380 main
conda 515.7 kB | osx-64/r-sctransform-0.4.1-r43hec4e08c_1.conda  7 months and 12 days ago 498 main
conda 502.7 kB | linux-ppc64le/r-sctransform-0.4.1-r44hee1cfac_1.conda  7 months and 12 days ago 227 main
conda 508.7 kB | linux-aarch64/r-sctransform-0.4.1-r43h5da6ed8_1.conda  7 months and 12 days ago 326 main
conda 515.2 kB | linux-64/r-sctransform-0.4.1-r43hb424bfc_1.conda  7 months and 12 days ago 7532 main
conda 502.5 kB | linux-64/r-sctransform-0.4.1-r44hb424bfc_1.conda  7 months and 12 days ago 4422 main
conda 511.5 kB | linux-ppc64le/r-sctransform-0.4.1-r43hfc38db2_0.conda  1 year and 4 months ago 140 main
conda 500.3 kB | win-64/r-sctransform-0.4.1-r41h78deb2a_0.conda  1 year and 4 months ago 692 main
conda 512.2 kB | linux-ppc64le/r-sctransform-0.4.1-r42hfc38db2_0.conda  1 year and 4 months ago 164 main
conda 505.5 kB | osx-arm64/r-sctransform-0.4.1-r43h68b3a90_0.conda  1 year and 4 months ago 692 main
conda 505.5 kB | osx-arm64/r-sctransform-0.4.1-r42h68b3a90_0.conda  1 year and 4 months ago 503 main
conda 513.9 kB | osx-64/r-sctransform-0.4.1-r43h86da9ac_0.conda  1 year and 4 months ago 599 main
conda 513.2 kB | osx-64/r-sctransform-0.4.1-r42h86da9ac_0.conda  1 year and 4 months ago 485 main
conda 511.0 kB | linux-64/r-sctransform-0.4.1-r42h08d816e_0.conda  1 year and 4 months ago 6464 main
conda 510.9 kB | linux-64/r-sctransform-0.4.1-r43h08d816e_0.conda  1 year and 4 months ago 8492 main
conda 504.4 kB | linux-aarch64/r-sctransform-0.4.1-r43h003610b_0.conda  1 year and 4 months ago 203 main
conda 505.5 kB | linux-aarch64/r-sctransform-0.4.1-r42h003610b_0.conda  1 year and 4 months ago 158 main
conda 512.0 kB | linux-ppc64le/r-sctransform-0.4.0-r42hfc38db2_0.conda  1 year and 5 months ago 137 main
conda 499.8 kB | win-64/r-sctransform-0.4.0-r41h78deb2a_0.conda  1 year and 5 months ago 410 main
conda 509.1 kB | osx-arm64/r-sctransform-0.4.0-r43hc749f48_0.conda  1 year and 5 months ago 372 main
conda 509.5 kB | osx-arm64/r-sctransform-0.4.0-r42hc749f48_0.conda  1 year and 5 months ago 351 main
conda 516.0 kB | osx-64/r-sctransform-0.4.0-r42hfaea39f_0.conda  1 year and 5 months ago 277 main
conda 510.9 kB | linux-ppc64le/r-sctransform-0.4.0-r43hfc38db2_0.conda  1 year and 5 months ago 129 main
conda 516.2 kB | osx-64/r-sctransform-0.4.0-r43hfaea39f_0.conda  1 year and 5 months ago 290 main
conda 510.5 kB | linux-64/r-sctransform-0.4.0-r43h08d816e_0.conda  1 year and 5 months ago 2433 main
conda 506.1 kB | linux-aarch64/r-sctransform-0.4.0-r43h003610b_0.conda  1 year and 5 months ago 159 main
conda 504.4 kB | linux-aarch64/r-sctransform-0.4.0-r42h003610b_0.conda  1 year and 5 months ago 141 main
conda 510.7 kB | linux-64/r-sctransform-0.4.0-r42h08d816e_0.conda  1 year and 5 months ago 2014 main
conda 506.1 kB | linux-ppc64le/r-sctransform-0.3.5-r42hfc38db2_2.conda  1 year and 5 months ago 134 main
conda 505.1 kB | linux-ppc64le/r-sctransform-0.3.5-r43hfc38db2_2.conda  1 year and 5 months ago 130 main
conda 499.4 kB | linux-aarch64/r-sctransform-0.3.5-r43h003610b_2.conda  1 year and 5 months ago 127 main
conda 499.5 kB | linux-aarch64/r-sctransform-0.3.5-r42h003610b_2.conda  1 year and 5 months ago 134 main
conda 494.4 kB | win-64/r-sctransform-0.3.5-r41h78deb2a_2.conda  1 year and 8 months ago 573 main
conda 503.5 kB | osx-arm64/r-sctransform-0.3.5-r42hc749f48_2.conda  1 year and 8 months ago 427 main
conda 502.8 kB | osx-arm64/r-sctransform-0.3.5-r43hc749f48_2.conda  1 year and 8 months ago 423 main
conda 509.2 kB | osx-64/r-sctransform-0.3.5-r43hfaea39f_2.conda  1 year and 8 months ago 428 main
conda 510.3 kB | osx-64/r-sctransform-0.3.5-r42hfaea39f_2.conda  1 year and 8 months ago 387 main
conda 505.0 kB | linux-64/r-sctransform-0.3.5-r43h08d816e_2.conda  1 year and 8 months ago 3714 main
conda 505.7 kB | linux-64/r-sctransform-0.3.5-r42h08d816e_2.conda  1 year and 8 months ago 5758 main
conda 562.6 kB | osx-arm64/r-sctransform-0.3.5-r41h55306a0_1.tar.bz2  2 years and 4 months ago 188 main
conda 555.0 kB | win-64/r-sctransform-0.3.5-r41h78deb2a_1.tar.bz2  2 years and 4 months ago 769 main
conda 561.8 kB | osx-arm64/r-sctransform-0.3.5-r42h55306a0_1.tar.bz2  2 years and 4 months ago 219 main
conda 575.4 kB | osx-64/r-sctransform-0.3.5-r42h4f1a15b_1.tar.bz2  2 years and 4 months ago 586 main
conda 576.5 kB | osx-64/r-sctransform-0.3.5-r41h4f1a15b_1.tar.bz2  2 years and 4 months ago 1713 main
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