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conda-forge / packages / r-sctransform

A normalization method for single-cell UMI count data using a variance stabilizing transformation. The transformation is based on a negative binomial regression model with regularized parameters. As part of the same regression framework, this package also provides functions for batch correction, and data correction. See Hafemeister and Satija 2019 <doi:10.1101/576827> for more details.

copied from cf-post-staging / r-sctransform

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Type Size Name Uploaded Downloads Labels
conda 506.1 kB | linux-ppc64le/r-sctransform-0.3.5-r42hfc38db2_2.conda  1 year and 8 months ago 136 main
conda 505.1 kB | linux-ppc64le/r-sctransform-0.3.5-r43hfc38db2_2.conda  1 year and 8 months ago 131 main
conda 499.4 kB | linux-aarch64/r-sctransform-0.3.5-r43h003610b_2.conda  1 year and 8 months ago 132 main
conda 499.5 kB | linux-aarch64/r-sctransform-0.3.5-r42h003610b_2.conda  1 year and 8 months ago 139 main
conda 494.4 kB | win-64/r-sctransform-0.3.5-r41h78deb2a_2.conda  1 year and 11 months ago 577 main
conda 503.5 kB | osx-arm64/r-sctransform-0.3.5-r42hc749f48_2.conda  1 year and 11 months ago 432 main
conda 502.8 kB | osx-arm64/r-sctransform-0.3.5-r43hc749f48_2.conda  1 year and 11 months ago 427 main
conda 509.2 kB | osx-64/r-sctransform-0.3.5-r43hfaea39f_2.conda  1 year and 11 months ago 433 main
conda 510.3 kB | osx-64/r-sctransform-0.3.5-r42hfaea39f_2.conda  1 year and 11 months ago 391 main
conda 505.0 kB | linux-64/r-sctransform-0.3.5-r43h08d816e_2.conda  1 year and 11 months ago 3967 main
conda 505.7 kB | linux-64/r-sctransform-0.3.5-r42h08d816e_2.conda  1 year and 11 months ago 6246 main
conda 562.6 kB | osx-arm64/r-sctransform-0.3.5-r41h55306a0_1.tar.bz2  2 years and 7 months ago 206 main
conda 555.0 kB | win-64/r-sctransform-0.3.5-r41h78deb2a_1.tar.bz2  2 years and 7 months ago 773 main
conda 561.8 kB | osx-arm64/r-sctransform-0.3.5-r42h55306a0_1.tar.bz2  2 years and 7 months ago 224 main
conda 575.4 kB | osx-64/r-sctransform-0.3.5-r42h4f1a15b_1.tar.bz2  2 years and 7 months ago 588 main
conda 576.5 kB | osx-64/r-sctransform-0.3.5-r41h4f1a15b_1.tar.bz2  2 years and 7 months ago 1836 main
conda 569.0 kB | linux-64/r-sctransform-0.3.5-r41h9f5de39_1.tar.bz2  2 years and 7 months ago 11132 main
conda 569.4 kB | linux-64/r-sctransform-0.3.5-r42h9f5de39_1.tar.bz2  2 years and 7 months ago 12284 main
conda 555.4 kB | win-64/r-sctransform-0.3.5-r41h78deb2a_0.tar.bz2  2 years and 7 months ago 549 main
conda 562.4 kB | osx-arm64/r-sctransform-0.3.5-r41h55306a0_0.tar.bz2  2 years and 7 months ago 82 main
conda 576.5 kB | osx-64/r-sctransform-0.3.5-r41h4f1a15b_0.tar.bz2  2 years and 7 months ago 96 main
conda 569.2 kB | linux-64/r-sctransform-0.3.5-r41h9f5de39_0.tar.bz2  2 years and 7 months ago 2164 main
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