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R implementation of generalized survival models (GSMs), smooth accelerated failure time (AFT) models and Markov multi-state models. For the GSMs, g(S(t|x))=eta(t,x) for a link function g, survival S at time t with covariates x and a linear predictor eta(t,x). The main assumption is that the time effect(s) are smooth <doi:10.1177/0962280216664760>. For fully parametric models with natural splines, this re-implements Stata's 'stpm2' function, which are flexible parametric survival models developed by Royston and colleagues. We have extended the parametric models to include any smooth parametric smoothers for time. We have also extended the model to include any smooth penalized smoothers from the 'mgcv' package, using penalized likelihood. These models include left truncation, right censoring, interval censoring, gamma frailties and normal random effects <doi:10.1002/sim.7451>. For the smooth AFTs, S(t|x) = S_0(t*eta(t,x)), where the baseline survival function S_0(t)=exp(-exp(eta_0(t))) is modelled for natural splines for eta_0, and the time-dependent cumulative acceleration factor eta(t,x)=\int_0^t exp(eta_1(u,x)) du for log acceleration factor eta_1(u,x). The Markov multi-state models allow for a range of models with smooth transitions to predict transition probabilities, length of stay, utilities and costs, with differences, ratios and standardisation.

copied from cf-staging / r-rstpm2
Type Size Name Uploaded Downloads Labels
conda 4.0 MB | win-64/r-rstpm2-1.6.6.1-r43h891d650_0.conda  3 months and 10 days ago 322 main
conda 4.0 MB | win-64/r-rstpm2-1.6.6.1-r44h891d650_0.conda  3 months and 10 days ago 370 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.6.1-r43h9c54416_0.conda  3 months and 10 days ago 219 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.6.1-r44h9c54416_0.conda  3 months and 10 days ago 219 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.6.1-r44h773be8d_0.conda  3 months and 10 days ago 496 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.6.1-r43h773be8d_0.conda  3 months and 10 days ago 497 main
conda 4.0 MB | win-64/r-rstpm2-1.6.6-r43h891d650_0.conda  5 months and 3 days ago 289 main
conda 4.0 MB | win-64/r-rstpm2-1.6.6-r44h891d650_0.conda  5 months and 3 days ago 286 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.6-r44h9c54416_0.conda  5 months and 3 days ago 229 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.6-r43h9c54416_0.conda  5 months and 3 days ago 208 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.6-r43h773be8d_0.conda  5 months and 3 days ago 625 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.6-r44h773be8d_0.conda  5 months and 3 days ago 603 main
conda 4.0 MB | win-64/r-rstpm2-1.6.5-r44h891d650_0.conda  7 months and 13 days ago 473 main
conda 4.0 MB | win-64/r-rstpm2-1.6.5-r43h891d650_0.conda  7 months and 13 days ago 490 main
conda 4.1 MB | osx-64/r-rstpm2-1.6.5-r44hc039d2b_0.conda  7 months and 13 days ago 381 main
conda 4.1 MB | osx-64/r-rstpm2-1.6.5-r43hc039d2b_0.conda  7 months and 13 days ago 417 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.5-r44h2ee40c2_0.conda  7 months and 13 days ago 980 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.5-r43h2ee40c2_0.conda  7 months and 13 days ago 1025 main
conda 4.0 MB | win-64/r-rstpm2-1.6.4-r44h891d650_0.conda  7 months and 14 days ago 502 main
conda 4.0 MB | win-64/r-rstpm2-1.6.4-r43h891d650_0.conda  7 months and 14 days ago 464 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.4-r43hc039d2b_0.conda  7 months and 14 days ago 392 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.4-r44hc039d2b_0.conda  7 months and 14 days ago 387 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.4-r43h2ee40c2_0.conda  7 months and 14 days ago 984 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.4-r44h2ee40c2_0.conda  7 months and 14 days ago 938 main
conda 4.0 MB | win-64/r-rstpm2-1.6.3-r43h891d650_1.conda  8 months and 20 days ago 458 main
conda 4.0 MB | win-64/r-rstpm2-1.6.3-r44h891d650_1.conda  8 months and 20 days ago 501 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.3-r43h2ee40c2_1.conda  8 months and 20 days ago 1127 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.3-r43hc039d2b_1.conda  8 months and 20 days ago 419 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.3-r44hc039d2b_1.conda  8 months and 20 days ago 382 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.3-r44h2ee40c2_1.conda  8 months and 20 days ago 1117 main
conda 4.0 MB | win-64/r-rstpm2-1.6.3-r41h30befbe_0.conda  1 year and 3 months ago 521 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.3-r42h3a810b1_0.conda  1 year and 3 months ago 468 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.3-r43h3a810b1_0.conda  1 year and 3 months ago 447 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.3-r42h9f9f741_0.conda  1 year and 3 months ago 1458 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.3-r43h9f9f741_0.conda  1 year and 3 months ago 1591 main
conda 2.3 MB | win-64/r-rstpm2-1.6.2-r41h30befbe_1.conda  1 year and 9 months ago 710 main
conda 2.4 MB | osx-64/r-rstpm2-1.6.2-r42h41c508b_1.conda  1 year and 9 months ago 446 main
conda 2.4 MB | osx-64/r-rstpm2-1.6.2-r43h41c508b_1.conda  1 year and 9 months ago 392 main
conda 2.3 MB | linux-64/r-rstpm2-1.6.2-r42h9f9f741_1.conda  1 year and 9 months ago 1634 main
conda 2.3 MB | linux-64/r-rstpm2-1.6.2-r43h9f9f741_1.conda  1 year and 9 months ago 1722 main
conda 2.3 MB | win-64/r-rstpm2-1.6.2-r41h30befbe_0.conda  2 years and 25 days ago 797 main
conda 2.4 MB | osx-64/r-rstpm2-1.6.2-r42hcfa4a20_0.conda  2 years and 25 days ago 418 main
conda 2.4 MB | osx-64/r-rstpm2-1.6.2-r41hcfa4a20_0.conda  2 years and 25 days ago 418 main
conda 2.3 MB | linux-64/r-rstpm2-1.6.2-r42h6d9afb5_0.conda  2 years and 25 days ago 1868 main
conda 2.3 MB | linux-64/r-rstpm2-1.6.2-r41h6d9afb5_0.conda  2 years and 25 days ago 1894 main
conda 2.3 MB | win-64/r-rstpm2-1.6.1-r41h30befbe_0.conda  2 years and 1 month ago 849 main
conda 2.4 MB | osx-64/r-rstpm2-1.6.1-r41hcfa4a20_0.conda  2 years and 1 month ago 419 main
conda 2.4 MB | osx-64/r-rstpm2-1.6.1-r42hcfa4a20_0.conda  2 years and 1 month ago 415 main
conda 2.3 MB | linux-64/r-rstpm2-1.6.1-r42h6d9afb5_0.conda  2 years and 1 month ago 1859 main
conda 2.3 MB | linux-64/r-rstpm2-1.6.1-r41h6d9afb5_0.conda  2 years and 1 month ago 1787 main

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