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R implementation of generalized survival models (GSMs), smooth accelerated failure time (AFT) models and Markov multi-state models. For the GSMs, g(S(t|x))=eta(t,x) for a link function g, survival S at time t with covariates x and a linear predictor eta(t,x). The main assumption is that the time effect(s) are smooth <doi:10.1177/0962280216664760>. For fully parametric models with natural splines, this re-implements Stata's 'stpm2' function, which are flexible parametric survival models developed by Royston and colleagues. We have extended the parametric models to include any smooth parametric smoothers for time. We have also extended the model to include any smooth penalized smoothers from the 'mgcv' package, using penalized likelihood. These models include left truncation, right censoring, interval censoring, gamma frailties and normal random effects <doi:10.1002/sim.7451>. For the smooth AFTs, S(t|x) = S_0(t*eta(t,x)), where the baseline survival function S_0(t)=exp(-exp(eta_0(t))) is modelled for natural splines for eta_0, and the time-dependent cumulative acceleration factor eta(t,x)=\int_0^t exp(eta_1(u,x)) du for log acceleration factor eta_1(u,x). The Markov multi-state models allow for a range of models with smooth transitions to predict transition probabilities, length of stay, utilities and costs, with differences, ratios and standardisation.

copied from cf-staging / r-rstpm2
Type Size Name Uploaded Downloads Labels
conda 4.0 MB | win-64/r-rstpm2-1.6.6.1-r43h891d650_0.conda  2 months and 17 days ago 316 main
conda 4.0 MB | win-64/r-rstpm2-1.6.6.1-r44h891d650_0.conda  2 months and 17 days ago 365 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.6.1-r43h9c54416_0.conda  2 months and 17 days ago 215 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.6.1-r44h9c54416_0.conda  2 months and 17 days ago 217 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.6.1-r44h773be8d_0.conda  2 months and 17 days ago 445 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.6.1-r43h773be8d_0.conda  2 months and 17 days ago 447 main
conda 4.0 MB | win-64/r-rstpm2-1.6.6-r43h891d650_0.conda  4 months and 13 days ago 283 main
conda 4.0 MB | win-64/r-rstpm2-1.6.6-r44h891d650_0.conda  4 months and 13 days ago 281 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.6-r44h9c54416_0.conda  4 months and 13 days ago 226 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.6-r43h9c54416_0.conda  4 months and 13 days ago 206 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.6-r43h773be8d_0.conda  4 months and 13 days ago 578 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.6-r44h773be8d_0.conda  4 months and 13 days ago 555 main
conda 4.0 MB | win-64/r-rstpm2-1.6.5-r44h891d650_0.conda  6 months and 21 days ago 467 main
conda 4.0 MB | win-64/r-rstpm2-1.6.5-r43h891d650_0.conda  6 months and 21 days ago 485 main
conda 4.1 MB | osx-64/r-rstpm2-1.6.5-r44hc039d2b_0.conda  6 months and 21 days ago 377 main
conda 4.1 MB | osx-64/r-rstpm2-1.6.5-r43hc039d2b_0.conda  6 months and 21 days ago 414 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.5-r44h2ee40c2_0.conda  6 months and 21 days ago 930 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.5-r43h2ee40c2_0.conda  6 months and 21 days ago 977 main
conda 4.0 MB | win-64/r-rstpm2-1.6.4-r44h891d650_0.conda  6 months and 22 days ago 497 main
conda 4.0 MB | win-64/r-rstpm2-1.6.4-r43h891d650_0.conda  6 months and 22 days ago 459 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.4-r43hc039d2b_0.conda  6 months and 22 days ago 388 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.4-r44hc039d2b_0.conda  6 months and 22 days ago 384 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.4-r43h2ee40c2_0.conda  6 months and 22 days ago 933 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.4-r44h2ee40c2_0.conda  6 months and 22 days ago 897 main
conda 4.0 MB | win-64/r-rstpm2-1.6.3-r43h891d650_1.conda  8 months and 11 hours ago 454 main
conda 4.0 MB | win-64/r-rstpm2-1.6.3-r44h891d650_1.conda  8 months and 11 hours ago 495 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.3-r43h2ee40c2_1.conda  8 months and 11 hours ago 1076 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.3-r43hc039d2b_1.conda  8 months and 11 hours ago 418 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.3-r44hc039d2b_1.conda  8 months and 11 hours ago 379 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.3-r44h2ee40c2_1.conda  8 months and 11 hours ago 1070 main
conda 4.0 MB | win-64/r-rstpm2-1.6.3-r41h30befbe_0.conda  1 year and 3 months ago 519 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.3-r42h3a810b1_0.conda  1 year and 3 months ago 467 main
conda 4.0 MB | osx-64/r-rstpm2-1.6.3-r43h3a810b1_0.conda  1 year and 3 months ago 445 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.3-r42h9f9f741_0.conda  1 year and 3 months ago 1410 main
conda 4.0 MB | linux-64/r-rstpm2-1.6.3-r43h9f9f741_0.conda  1 year and 3 months ago 1549 main
conda 2.3 MB | win-64/r-rstpm2-1.6.2-r41h30befbe_1.conda  1 year and 8 months ago 708 main
conda 2.4 MB | osx-64/r-rstpm2-1.6.2-r42h41c508b_1.conda  1 year and 8 months ago 446 main
conda 2.4 MB | osx-64/r-rstpm2-1.6.2-r43h41c508b_1.conda  1 year and 8 months ago 391 main
conda 2.3 MB | linux-64/r-rstpm2-1.6.2-r42h9f9f741_1.conda  1 year and 8 months ago 1587 main
conda 2.3 MB | linux-64/r-rstpm2-1.6.2-r43h9f9f741_1.conda  1 year and 8 months ago 1677 main
conda 2.3 MB | win-64/r-rstpm2-1.6.2-r41h30befbe_0.conda  2 years and 5 days ago 794 main
conda 2.4 MB | osx-64/r-rstpm2-1.6.2-r42hcfa4a20_0.conda  2 years and 5 days ago 418 main
conda 2.4 MB | osx-64/r-rstpm2-1.6.2-r41hcfa4a20_0.conda  2 years and 5 days ago 417 main
conda 2.3 MB | linux-64/r-rstpm2-1.6.2-r42h6d9afb5_0.conda  2 years and 5 days ago 1820 main
conda 2.3 MB | linux-64/r-rstpm2-1.6.2-r41h6d9afb5_0.conda  2 years and 5 days ago 1853 main
conda 2.3 MB | win-64/r-rstpm2-1.6.1-r41h30befbe_0.conda  2 years and 13 days ago 846 main
conda 2.4 MB | osx-64/r-rstpm2-1.6.1-r41hcfa4a20_0.conda  2 years and 13 days ago 419 main
conda 2.4 MB | osx-64/r-rstpm2-1.6.1-r42hcfa4a20_0.conda  2 years and 13 days ago 414 main
conda 2.3 MB | linux-64/r-rstpm2-1.6.1-r42h6d9afb5_0.conda  2 years and 13 days ago 1810 main
conda 2.3 MB | linux-64/r-rstpm2-1.6.1-r41h6d9afb5_0.conda  2 years and 13 days ago 1739 main

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