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R implementation of generalized survival models (GSMs), smooth accelerated failure time (AFT) models and Markov multi-state models. For the GSMs, g(S(t|x))=eta(t,x) for a link function g, survival S at time t with covariates x and a linear predictor eta(t,x). The main assumption is that the time effect(s) are smooth <doi:10.1177/0962280216664760>. For fully parametric models with natural splines, this re-implements Stata's 'stpm2' function, which are flexible parametric survival models developed by Royston and colleagues. We have extended the parametric models to include any smooth parametric smoothers for time. We have also extended the model to include any smooth penalized smoothers from the 'mgcv' package, using penalized likelihood. These models include left truncation, right censoring, interval censoring, gamma frailties and normal random effects <doi:10.1002/sim.7451>. For the smooth AFTs, S(t|x) = S_0(t*eta(t,x)), where the baseline survival function S_0(t)=exp(-exp(eta_0(t))) is modelled for natural splines for eta_0, and the time-dependent cumulative acceleration factor eta(t,x)=\int_0^t exp(eta_1(u,x)) du for log acceleration factor eta_1(u,x). The Markov multi-state models allow for a range of models with smooth transitions to predict transition probabilities, length of stay, utilities and costs, with differences, ratios and standardisation.

copied from cf-staging / r-rstpm2
Type Size Name Uploaded Downloads Labels
conda 2.2 MB | win-64/r-rstpm2-1.5.9-r41h30befbe_0.conda  2 years and 2 months ago 897 main
conda 2.2 MB | osx-64/r-rstpm2-1.5.9-r41hcfa4a20_0.conda  2 years and 2 months ago 419 main
conda 2.2 MB | osx-64/r-rstpm2-1.5.9-r42hcfa4a20_0.conda  2 years and 2 months ago 420 main
conda 2.2 MB | linux-64/r-rstpm2-1.5.9-r41h6d9afb5_0.conda  2 years and 2 months ago 1855 main
conda 2.2 MB | linux-64/r-rstpm2-1.5.9-r42h6d9afb5_0.conda  2 years and 2 months ago 1883 main
conda 2.4 MB | win-64/r-rstpm2-1.5.8-r41h30befbe_0.tar.bz2  2 years and 4 months ago 520 main
conda 2.5 MB | osx-64/r-rstpm2-1.5.8-r42hcfa4a20_0.tar.bz2  2 years and 4 months ago 70 main
conda 2.5 MB | osx-64/r-rstpm2-1.5.8-r41hcfa4a20_0.tar.bz2  2 years and 4 months ago 67 main
conda 2.4 MB | linux-64/r-rstpm2-1.5.8-r42hbb4fff6_0.tar.bz2  2 years and 4 months ago 1768 main
conda 2.4 MB | linux-64/r-rstpm2-1.5.8-r41hbb4fff6_0.tar.bz2  2 years and 4 months ago 1808 main
conda 2.3 MB | win-64/r-rstpm2-1.5.7-r41h30befbe_1.tar.bz2  2 years and 5 months ago 530 main
conda 2.5 MB | osx-64/r-rstpm2-1.5.7-r42hcfa4a20_1.tar.bz2  2 years and 5 months ago 69 main
conda 2.4 MB | linux-64/r-rstpm2-1.5.7-r42hbb4fff6_1.tar.bz2  2 years and 5 months ago 1859 main
conda 2.4 MB | linux-64/r-rstpm2-1.5.7-r41hbb4fff6_1.tar.bz2  2 years and 5 months ago 1812 main
conda 2.4 MB | win-64/r-rstpm2-1.5.7-r40h30befbe_0.tar.bz2  2 years and 7 months ago 633 main
conda 2.3 MB | win-64/r-rstpm2-1.5.7-r41h30befbe_0.tar.bz2  2 years and 7 months ago 634 main
conda 2.5 MB | osx-64/r-rstpm2-1.5.7-r41hfa0d438_0.tar.bz2  2 years and 7 months ago 73 main
conda 2.5 MB | osx-64/r-rstpm2-1.5.7-r40hfa0d438_0.tar.bz2  2 years and 7 months ago 73 main
conda 2.4 MB | linux-64/r-rstpm2-1.5.7-r41hbb4fff6_0.tar.bz2  2 years and 7 months ago 1988 main
conda 2.4 MB | linux-64/r-rstpm2-1.5.7-r40hbb4fff6_0.tar.bz2  2 years and 7 months ago 2001 main
conda 2.4 MB | win-64/r-rstpm2-1.5.6-r40h438b884_0.tar.bz2  2 years and 10 months ago 688 main
conda 2.3 MB | win-64/r-rstpm2-1.5.6-r41h438b884_0.tar.bz2  2 years and 10 months ago 682 main
conda 2.5 MB | osx-64/r-rstpm2-1.5.6-r40h8a37116_0.tar.bz2  2 years and 10 months ago 79 main
conda 2.4 MB | osx-64/r-rstpm2-1.5.6-r41h8a37116_0.tar.bz2  2 years and 10 months ago 83 main
conda 2.4 MB | linux-64/r-rstpm2-1.5.6-r41he9dea17_0.tar.bz2  2 years and 10 months ago 2086 main
conda 2.4 MB | linux-64/r-rstpm2-1.5.6-r40he9dea17_0.tar.bz2  2 years and 10 months ago 2085 main
conda 2.4 MB | win-64/r-rstpm2-1.5.5-r40h438b884_0.tar.bz2  2 years and 10 months ago 699 main
conda 2.3 MB | win-64/r-rstpm2-1.5.5-r41h438b884_0.tar.bz2  2 years and 10 months ago 691 main
conda 2.5 MB | osx-64/r-rstpm2-1.5.5-r40h669364a_0.tar.bz2  2 years and 10 months ago 77 main
conda 2.5 MB | osx-64/r-rstpm2-1.5.5-r41h669364a_0.tar.bz2  2 years and 10 months ago 76 main
conda 2.4 MB | linux-64/r-rstpm2-1.5.5-r40he9dea17_0.tar.bz2  2 years and 10 months ago 2131 main
conda 2.4 MB | linux-64/r-rstpm2-1.5.5-r41he9dea17_0.tar.bz2  2 years and 10 months ago 2103 main
conda 2.3 MB | win-64/r-rstpm2-1.5.2-r41h438b884_0.tar.bz2  3 years and 9 months ago 800 main
conda 2.4 MB | osx-64/r-rstpm2-1.5.2-r41hb984973_0.tar.bz2  3 years and 9 months ago 143 main
conda 2.4 MB | linux-64/r-rstpm2-1.5.2-r41h2f3b0b6_0.tar.bz2  3 years and 9 months ago 2433 main
conda 2.3 MB | win-64/r-rstpm2-1.5.2-r40h438b884_0.tar.bz2  3 years and 10 months ago 856 main
conda 2.3 MB | win-64/r-rstpm2-1.5.2-r36h438b884_0.tar.bz2  3 years and 10 months ago 860 main
conda 2.3 MB | osx-64/r-rstpm2-1.5.2-r36hb984973_0.tar.bz2  3 years and 10 months ago 194 main
conda 2.4 MB | osx-64/r-rstpm2-1.5.2-r40hb984973_0.tar.bz2  3 years and 10 months ago 204 main
conda 2.4 MB | linux-64/r-rstpm2-1.5.2-r40h2f3b0b6_0.tar.bz2  3 years and 10 months ago 2511 main
conda 2.3 MB | linux-64/r-rstpm2-1.5.2-r36h2f3b0b6_0.tar.bz2  3 years and 10 months ago 2530 main
conda 2.9 MB | osx-64/r-rstpm2-1.5.1-r36hb984973_0.tar.bz2  3 years and 10 months ago 199 main
conda 2.8 MB | win-64/r-rstpm2-1.5.1-r36h438b884_0.tar.bz2  3 years and 10 months ago 877 main
conda 2.8 MB | win-64/r-rstpm2-1.5.1-r40h438b884_0.tar.bz2  3 years and 10 months ago 869 main
conda 2.9 MB | osx-64/r-rstpm2-1.5.1-r40hb984973_0.tar.bz2  3 years and 10 months ago 189 main
conda 2.8 MB | linux-64/r-rstpm2-1.5.1-r36h2f3b0b6_0.tar.bz2  3 years and 10 months ago 2487 main
conda 2.9 MB | linux-64/r-rstpm2-1.5.1-r40h2f3b0b6_0.tar.bz2  3 years and 10 months ago 2496 main

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