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A toolkit for working with Biological Observation Matrix ('BIOM') files. Features include reading/writing all 'BIOM' formats, rarefaction, alpha diversity, beta diversity (including 'UniFrac'), summarizing counts by taxonomic level, and sample subsetting. Standalone functions for reading, writing, and subsetting phylogenetic trees are also provided. All CPU intensive operations are encoded in C with multi-thread support.

copied from cf-post-staging / r-rbiom
Type Size Name Uploaded Downloads Labels
conda 1.5 MB | osx-arm64/r-rbiom-2.2.1-r43h31118f2_0.conda  1 month and 26 days ago 27 main
conda 1.5 MB | osx-64/r-rbiom-2.2.1-r43h2711daa_0.conda  1 month and 26 days ago 29 main
conda 1.6 MB | osx-arm64/r-rbiom-2.2.1-r44h31118f2_0.conda  1 month and 26 days ago 50 main
conda 1.6 MB | osx-64/r-rbiom-2.2.1-r44h2711daa_0.conda  1 month and 26 days ago 47 main
conda 1.6 MB | linux-ppc64le/r-rbiom-2.2.1-r44h8455397_0.conda  1 month and 26 days ago 18 main
conda 1.6 MB | linux-aarch64/r-rbiom-2.2.1-r44h21d2c02_0.conda  1 month and 26 days ago 54 main
conda 1.5 MB | linux-aarch64/r-rbiom-2.2.1-r43h21d2c02_0.conda  1 month and 26 days ago 36 main
conda 1.5 MB | linux-ppc64le/r-rbiom-2.2.1-r43h8455397_0.conda  1 month and 26 days ago 17 main
conda 1.5 MB | linux-64/r-rbiom-2.2.1-r43h93ab643_0.conda  1 month and 26 days ago 342 main
conda 1.6 MB | linux-64/r-rbiom-2.2.1-r44h93ab643_0.conda  1 month and 26 days ago 1037 main

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