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A toolkit for working with Biological Observation Matrix ('BIOM') files. Features include reading/writing all 'BIOM' formats, rarefaction, alpha diversity, beta diversity (including 'UniFrac'), summarizing counts by taxonomic level, and sample subsetting. Standalone functions for reading, writing, and subsetting phylogenetic trees are also provided. All CPU intensive operations are encoded in C with multi-thread support.

copied from cf-post-staging / r-rbiom
Type Size Name Uploaded Downloads Labels
conda 1.5 MB | osx-arm64/r-rbiom-2.2.1-r43h31118f2_0.conda  1 month and 19 days ago 26 main
conda 1.5 MB | osx-64/r-rbiom-2.2.1-r43h2711daa_0.conda  1 month and 19 days ago 27 main
conda 1.6 MB | osx-arm64/r-rbiom-2.2.1-r44h31118f2_0.conda  1 month and 19 days ago 43 main
conda 1.6 MB | osx-64/r-rbiom-2.2.1-r44h2711daa_0.conda  1 month and 19 days ago 45 main
conda 1.6 MB | linux-ppc64le/r-rbiom-2.2.1-r44h8455397_0.conda  1 month and 19 days ago 17 main
conda 1.6 MB | linux-aarch64/r-rbiom-2.2.1-r44h21d2c02_0.conda  1 month and 19 days ago 49 main
conda 1.5 MB | linux-aarch64/r-rbiom-2.2.1-r43h21d2c02_0.conda  1 month and 19 days ago 33 main
conda 1.5 MB | linux-ppc64le/r-rbiom-2.2.1-r43h8455397_0.conda  1 month and 19 days ago 16 main
conda 1.5 MB | linux-64/r-rbiom-2.2.1-r43h93ab643_0.conda  1 month and 19 days ago 298 main
conda 1.6 MB | linux-64/r-rbiom-2.2.1-r44h93ab643_0.conda  1 month and 19 days ago 869 main

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