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A toolkit for working with Biological Observation Matrix ('BIOM') files. Features include reading/writing all 'BIOM' formats, rarefaction, alpha diversity, beta diversity (including 'UniFrac'), summarizing counts by taxonomic level, and sample subsetting. Standalone functions for reading, writing, and subsetting phylogenetic trees are also provided. All CPU intensive operations are encoded in C with multi-thread support.

copied from cf-staging / r-rbiom
Type Size Name Uploaded Downloads Labels
conda 300.9 kB | win-64/r-rbiom-1.0.3-r44h8ae3a7c_3.conda  4 months and 17 days ago 131 main
conda 297.9 kB | win-64/r-rbiom-1.0.3-r43h8ae3a7c_3.conda  4 months and 17 days ago 130 main
conda 295.3 kB | osx-arm64/r-rbiom-1.0.3-r44hdd833ad_3.conda  4 months and 17 days ago 76 main
conda 291.2 kB | osx-arm64/r-rbiom-1.0.3-r43hdd833ad_3.conda  4 months and 17 days ago 67 main
conda 293.5 kB | osx-64/r-rbiom-1.0.3-r43hc83a2cd_3.conda  4 months and 17 days ago 183 main
conda 296.4 kB | osx-64/r-rbiom-1.0.3-r44hc83a2cd_3.conda  4 months and 17 days ago 123 main
conda 311.6 kB | linux-64/r-rbiom-1.0.3-r43h93ab643_3.conda  4 months and 17 days ago 1674 main
conda 313.7 kB | linux-64/r-rbiom-1.0.3-r44h93ab643_3.conda  4 months and 17 days ago 681 main
conda 293.6 kB | osx-64/r-rbiom-1.0.3-r42h64b2c41_2.conda  1 year and 1 month ago 227 main
conda 400.6 kB | osx-arm64/r-rbiom-1.0.3-r42he96f11e_2.conda  1 year and 1 month ago 139 main
conda 400.9 kB | osx-arm64/r-rbiom-1.0.3-r43he96f11e_2.conda  1 year and 1 month ago 128 main
conda 293.6 kB | osx-64/r-rbiom-1.0.3-r43h64b2c41_2.conda  1 year and 1 month ago 253 main
conda 303.6 kB | win-64/r-rbiom-1.0.3-r41ha856d6a_2.conda  1 year and 6 months ago 343 main
conda 294.7 kB | osx-64/r-rbiom-1.0.3-r42hac7d2d5_2.conda  1 year and 6 months ago 158 main
conda 294.4 kB | osx-64/r-rbiom-1.0.3-r43hac7d2d5_2.conda  1 year and 6 months ago 149 main
conda 308.1 kB | linux-64/r-rbiom-1.0.3-r43ha503ecb_2.conda  1 year and 6 months ago 2746 main
conda 309.0 kB | linux-64/r-rbiom-1.0.3-r42ha503ecb_2.conda  1 year and 6 months ago 2475 main
conda 342.9 kB | win-64/r-rbiom-1.0.3-r41ha856d6a_1.tar.bz2  2 years and 2 months ago 534 main
conda 321.7 kB | osx-64/r-rbiom-1.0.3-r42h49197e3_1.tar.bz2  2 years and 2 months ago 92 main
conda 321.5 kB | osx-64/r-rbiom-1.0.3-r41h49197e3_1.tar.bz2  2 years and 2 months ago 81 main
conda 339.9 kB | linux-64/r-rbiom-1.0.3-r41h7525677_1.tar.bz2  2 years and 2 months ago 1682 main
conda 340.3 kB | linux-64/r-rbiom-1.0.3-r42h7525677_1.tar.bz2  2 years and 2 months ago 1667 main
conda 351.9 kB | win-64/r-rbiom-1.0.3-r40ha856d6a_0.tar.bz2  3 years and 2 months ago 743 main
conda 342.3 kB | win-64/r-rbiom-1.0.3-r41ha856d6a_0.tar.bz2  3 years and 2 months ago 709 main
conda 313.6 kB | osx-64/r-rbiom-1.0.3-r41h9951f98_0.tar.bz2  3 years and 2 months ago 86 main
conda 313.5 kB | osx-64/r-rbiom-1.0.3-r40h9951f98_0.tar.bz2  3 years and 2 months ago 95 main
conda 345.0 kB | linux-64/r-rbiom-1.0.3-r40h03ef668_0.tar.bz2  3 years and 2 months ago 2116 main
conda 345.2 kB | linux-64/r-rbiom-1.0.3-r41h03ef668_0.tar.bz2  3 years and 2 months ago 2049 main
conda 352.5 kB | win-64/r-rbiom-1.0.2-r40ha856d6a_0.tar.bz2  3 years and 3 months ago 721 main
conda 341.8 kB | win-64/r-rbiom-1.0.2-r41ha856d6a_0.tar.bz2  3 years and 3 months ago 744 main
conda 313.2 kB | osx-64/r-rbiom-1.0.2-r40h9951f98_0.tar.bz2  3 years and 3 months ago 89 main
conda 313.2 kB | osx-64/r-rbiom-1.0.2-r41h9951f98_0.tar.bz2  3 years and 3 months ago 92 main
conda 344.8 kB | linux-64/r-rbiom-1.0.2-r40h03ef668_0.tar.bz2  3 years and 3 months ago 2071 main
conda 344.9 kB | linux-64/r-rbiom-1.0.2-r41h03ef668_0.tar.bz2  3 years and 3 months ago 2081 main

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