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Originally as an R version of Preseq <doi:10.1038/nmeth.2375>, the package has extended its functionality to predict the r-species accumulation curve (r-SAC), which is the number of species represented at least r times as a function of the sampling effort. When r = 1, the curve is known as the species accumulation curve, or the library complexity curve in high-throughput genomic sequencing. The package includes both parametric and nonparametric methods, as described by Deng C, et al. (2018) <arXiv:1607.02804v3>.

copied from cf-staging / r-preseqr
Type Size Name Uploaded Downloads Labels
conda 239.3 kB | noarch/r-preseqr-4.0.0-r43hc72bb7e_1005.conda  1 year and 1 month ago 1091 main
conda 242.2 kB | noarch/r-preseqr-4.0.0-r44hc72bb7e_1005.conda  1 year and 1 month ago 1124 main
conda 239.1 kB | noarch/r-preseqr-4.0.0-r43hc72bb7e_1004.conda  2 years and 2 months ago 1712 main
conda 239.3 kB | noarch/r-preseqr-4.0.0-r42hc72bb7e_1004.conda  2 years and 2 months ago 1406 main
conda 243.8 kB | noarch/r-preseqr-4.0.0-r41hc72bb7e_1003.tar.bz2  2 years and 10 months ago 1792 main
conda 244.0 kB | noarch/r-preseqr-4.0.0-r42hc72bb7e_1003.tar.bz2  2 years and 10 months ago 1858 main
conda 242.9 kB | noarch/r-preseqr-4.0.0-r41hc72bb7e_1002.tar.bz2  4 years and 3 months ago 2489 main
conda 242.8 kB | noarch/r-preseqr-4.0.0-r40hc72bb7e_1002.tar.bz2  4 years and 3 months ago 2406 main
conda 242.1 kB | noarch/r-preseqr-4.0.0-r40h6115d3f_1002.tar.bz2  5 years and 3 months ago 3261 main
conda 243.0 kB | noarch/r-preseqr-4.0.0-r36h6115d3f_1002.tar.bz2  5 years and 3 months ago 3209 main
conda 241.4 kB | noarch/r-preseqr-4.0.0-r35h6115d3f_1001.tar.bz2  6 years and 1 month ago 4103 main cf202003
conda 243.0 kB | noarch/r-preseqr-4.0.0-r36h6115d3f_1001.tar.bz2  6 years and 1 month ago 4153 main cf202003
conda 229.1 kB | noarch/r-preseqr-4.0.0-r351h6115d3f_1000.tar.bz2  6 years and 9 months ago 4847 main cf202003 gcc7 cf201901
conda 228.2 kB | osx-64/r-preseqr-4.0.0-r351h6115d3f_0.tar.bz2  6 years and 10 months ago 373 main cf202003 cf201901
conda 241.6 kB | win-64/r-preseqr-4.0.0-r351h6115d3f_0.tar.bz2  6 years and 10 months ago 1694 main cf202003 cf201901
conda 180.2 kB | osx-64/r-preseqr-4.0.0-r341h6115d3f_0.tar.bz2  6 years and 10 months ago 369 main cf202003 cf201901
conda 228.9 kB | linux-64/r-preseqr-4.0.0-r351h6115d3f_0.tar.bz2  6 years and 10 months ago 4972 main cf202003 cf201901
conda 180.7 kB | linux-64/r-preseqr-4.0.0-r341h6115d3f_0.tar.bz2  6 years and 10 months ago 5219 main cf202003 cf201901
conda 193.3 kB | win-64/r-preseqr-4.0.0-r341h6115d3f_0.tar.bz2  6 years and 10 months ago 1713 main cf202003 cf201901
conda 93.5 kB | osx-64/r-preseqr-3.1.2-r3.4.1_0.tar.bz2  7 years and 9 months ago 929 main cf202003 cf201901
conda 92.5 kB | osx-64/r-preseqr-3.1.2-r3.3.2_0.tar.bz2  7 years and 11 months ago 899 main cf202003 cf201901
conda 101.7 kB | win-64/r-preseqr-3.1.2-r3.4.1_0.tar.bz2  7 years and 11 months ago 2445 main cf202003 cf201901
conda 92.7 kB | linux-64/r-preseqr-3.1.2-r3.3.2_0.tar.bz2  7 years and 11 months ago 5890 main cf202003 cf201901
conda 92.9 kB | linux-64/r-preseqr-3.1.2-r3.4.1_0.tar.bz2  7 years and 11 months ago 5857 main cf202003 cf201901
conda 102.5 kB | win-64/r-preseqr-3.1.2-r3.3.2_0.tar.bz2  7 years and 11 months ago 2485 main cf202003 cf201901

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