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Originally as an R version of Preseq <doi:10.1038/nmeth.2375>, the package has extended its functionality to predict the r-species accumulation curve (r-SAC), which is the number of species represented at least r times as a function of the sampling effort. When r = 1, the curve is known as the species accumulation curve, or the library complexity curve in high-throughput genomic sequencing. The package includes both parametric and nonparametric methods, as described by Deng C, et al. (2018) <arXiv:1607.02804v3>.

copied from cf-staging / r-preseqr

Installers

Info: This package contains files in non-standard labels.
  • noarch v4.0.0
  • win-64 v4.0.0
  • linux-64 v4.0.0
  • osx-64 v4.0.0

conda install

To install this package run one of the following:
conda install conda-forge::r-preseqr
conda install conda-forge/label/cf201901::r-preseqr
conda install conda-forge/label/cf202003::r-preseqr
conda install conda-forge/label/gcc7::r-preseqr

Description


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