|
resistify
|
public |
A resistance gene annotation tool.
|
2025-01-23 |
|
pybwa
|
public |
Pybwa is a python module that makes it easy to align sequence data. It is a lightweight wrapper of bwa.
|
2025-01-23 |
|
kma
|
public |
KMA is a mapping method designed to map raw reads directly against redundant databases, in an ultra-fast manner using seed and extend.
|
2025-01-23 |
|
openms
|
public |
OpenMS is an open-source software C++ library for LC-MS data management and analyses
|
2025-01-23 |
|
libopenms
|
public |
OpenMS is an open-source software C++ library for LC-MS data management and analyses
|
2025-01-23 |
|
openms-thirdparty
|
public |
OpenMS is an open-source software C++ library for LC-MS data management and analyses
|
2025-01-23 |
|
perl-string-diff
|
public |
Simple diff to String
|
2025-01-23 |
|
spaln
|
public |
Map and align a set of cDNA/EST or protein sequences onto a genome
|
2025-01-23 |
|
primerforge
|
public |
primerForge: software to identify primers that can be used to distinguish genomes.
|
2025-01-23 |
|
longstitch
|
public |
A genome assembly correction and scaffolding pipeline using long reads
|
2025-01-23 |
|
bioconda-repodata-patches
|
public |
generate tweaks to index metadata, hosted separately from anaconda.org index
|
2025-01-23 |
|
khmer
|
public |
khmer k-mer counting library
|
2025-01-23 |
|
aviary
|
public |
End-to-end metagenomics hybrid assembly and binning pipeline.
|
2025-01-22 |
|
excludonfinder
|
public |
A tool for identifying and analyzing excludons in genomic data using RNA-seq data.
|
2025-01-22 |
|
itsxpress
|
public |
ITSxpress: Software to rapidly trim the Internally Transcribed Spacer (ITS) region from FASTQ files.
|
2025-01-22 |
|
ectyper
|
public |
ECtyper is a python program for serotyping E. coli genomes
|
2025-01-22 |
|
multiqc
|
public |
Create aggregate bioinformatics analysis reports across many samples and tools.
|
2025-01-22 |
|
auspice
|
public |
Auspice is an open-source interactive tool for visualising phylogenomic data
|
2025-01-22 |
|
snakemake-executor-plugin-slurm
|
public |
A Snakemake executor plugin for submitting jobs to a SLURM cluster.
|
2025-01-22 |
|
grampa
|
public |
GRAMPA is a program to identify and place polyploidy events on a phylogeny and to count duplications and losses in the presence of polyploidy.
|
2025-01-22 |
|
cmat
|
public |
ClinVar Mapping and Annotation Toolkit
|
2025-01-22 |
|
metacerberus-lite
|
public |
MetaCerberus with reduced dependencies: Versatile Functional Ontology Assignments for Metagenomes via Hidden Markov Model (HMM) searching with environmental focus of shotgun meta'omics data
|
2025-01-22 |
|
metacerberus
|
public |
Versatile Functional Ontology Assignments for Metagenomes via Hidden Markov Model (HMM) searching with environmental focus of shotgun meta'omics data
|
2025-01-22 |
|
harpy
|
public |
Process raw haplotagging data, from raw sequences to phased haplotypes.
|
2025-01-22 |
|
deeptoolsintervals
|
public |
A python module creating/accessing GTF-based interval trees with associated meta-data
|
2025-01-22 |
|
ncbi-stxtyper
|
public |
StxTyper identifies and types Stx operons from assembled genomic sequence.
|
2025-01-22 |
|
emu-pca
|
public |
EM-PCA for Ultra-low Coverage Sequencing Data.
|
2025-01-22 |
|
perl-socket
|
public |
networking constants and support functions
|
2025-01-22 |
|
fmsi
|
public |
FMSI - memory efficient k-mer set index based on masked superstrings and Burrows-Wheeler transform.
|
2025-01-22 |
|
cpstools
|
public |
CPStools is a package for analyzing chloroplast genome sequences.
|
2025-01-22 |
|
whatshap
|
public |
Phase genomic variants using DNA sequencing reads (haplotype assembly).
|
2025-01-22 |
|
mpra-data-access-portal
|
public |
Saturation mutagenesis MPRA data access portal.
|
2025-01-22 |
|
nanomotif
|
public |
Identifying methlyation motifs in nanopore data
|
2025-01-22 |
|
scmidas
|
public |
A torch-based integration method for single-cell multi-omic data.
|
2025-01-22 |
|
augur
|
public |
Process pathogen genome data for the Nextstrain platform.
|
2025-01-22 |
|
ncbi-vdb-py
|
public |
SRA tools database engine (Python bindings).
|
2025-01-22 |
|
iced
|
public |
The python module iced implements the ICE normalization of hic data.
|
2025-01-22 |
|
kleborate
|
public |
Kleborate: a tool for typing and screening pathogen genome assemblies
|
2025-01-21 |
|
eastr
|
public |
Tool for emending alignments of spuriously spliced transcript reads.
|
2025-01-21 |
|
aspera-cli
|
public |
Command Line Interface for IBM Aspera products.
|
2025-01-21 |
|
icfree-ml
|
public |
Design of experiments (DoE) and machine learning packages for the iCFree project
|
2025-01-21 |
|
sra-tools
|
public |
The SRA Toolkit and SDK from NCBI.
|
2025-01-21 |
|
tiddit
|
public |
TIDDIT - structural variant calling.
|
2025-01-21 |
|
py2bit
|
public |
A package for accessing 2bit files using lib2bit
|
2025-01-21 |
|
emu
|
public |
Emu is a relative abundance estimator for 16s genomic data.
|
2025-01-21 |
|
ena-upload-cli
|
public |
Command Line Interface to upload data to the European Nucleotide Archive
|
2025-01-21 |
|
crocodeel
|
public |
CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data
|
2025-01-21 |
|
ms2pip
|
public |
MS²PIP: MS² Peak Intensity Prediction
|
2025-01-21 |
|
virusrecom
|
public |
An information-theory-based method for recombination detection of viral lineages.
|
2025-01-21 |
|
kbo-cli
|
public |
Command-line interface for the kbo local aligner
|
2025-01-21 |
