CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data
CroCoDeEL is a tool that detects cross-sample (aka well-to-well) contamination in shotgun metagenomic data. It accurately identifies contaminated samples but also pinpoints contamination sources and estimates contamination rates. CroCoDeEL relies only on species abundance tables and does not need negative controls.
