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bioconductor-bcseq
|
public |
Fast Sequence Mapping in High-Throughput shRNA and CRISPR Screens
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2024-12-19 |
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bioconductor-msbackendmgf
|
public |
Mass Spectrometry Data Backend for Mascot Generic Format (mgf) Files
|
2024-12-19 |
|
ascat
|
public |
ASCAT is a method to derive copy number profiles of tumour cells,
accounting for normal cell admixture and tumour aneuploidy (Figure 1).
ASCAT infers tumour purity (the fraction of tumour cells) and ploidy (the
amount of DNA per tumour cell, expressed as multiples of haploid genomes)
from SNP array or massively parallel sequencing data, and calculates
whole-genome allele-specific copy number profiles (the number of copies of
both parental alleles for all SNP loci across the genome).
|
2024-12-19 |
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bioconductor-selex
|
public |
Functions for analyzing SELEX-seq data
|
2024-12-19 |
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bioconductor-packfinder
|
public |
de novo Annotation of Pack-TYPE Transposable Elements
|
2024-12-19 |
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bioconductor-cindex
|
public |
Chromosome Instability Index
|
2024-12-19 |
|
bioconductor-dmrscan
|
public |
Detection of Differentially Methylated Regions
|
2024-12-19 |
|
bioconductor-brew3r.r
|
public |
R package associated to BREW3R
|
2024-12-19 |
|
bioconductor-universalmotif
|
public |
Import, Modify, and Export Motifs with R
|
2024-12-19 |
|
bioconductor-gmrp
|
public |
GWAS-based Mendelian Randomization and Path Analyses
|
2024-12-19 |
|
bioconductor-sscu
|
public |
Strength of Selected Codon Usage
|
2024-12-19 |
|
bioconductor-transite
|
public |
RNA-binding protein motif analysis
|
2024-12-19 |
|
bioconductor-meigor
|
public |
MEIGOR - MEtaheuristics for bIoinformatics Global Optimization
|
2024-12-19 |
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bioconductor-qtlizer
|
public |
Comprehensive QTL annotation of GWAS results
|
2024-12-19 |
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bioconductor-cordon
|
public |
Codon Usage Analysis and Prediction of Gene Expressivity
|
2024-12-19 |
|
bioconductor-scoup
|
public |
Simulate Codons with Darwinian Selection Modelled as an OU Process
|
2024-12-19 |
|
bioconductor-pqsfinder
|
public |
Identification of potential quadruplex forming sequences
|
2024-12-19 |
|
r-statvisual
|
public |
Visualization functions in the applications of translational medicine (TM) and biomarker (BM) development to compare groups by statistically visualizing data and/or results of analyses, such as visualizing data by displaying in one figure different groups' histograms, boxplots, densities, scatter plots, error-bar plots, or trajectory plots, by displaying scatter plots of top principal components or dendrograms with data points colored based on group information, or visualizing volcano plots to check the results of whole genome analyses for gene differential expression.
|
2024-12-19 |
|
bioconductor-dnashaper
|
public |
High-throughput prediction of DNA shape features
|
2024-12-19 |
|
bioconductor-crisprbase
|
public |
Base functions and classes for CRISPR gRNA design
|
2024-12-19 |
|
bioconductor-lola
|
public |
Locus overlap analysis for enrichment of genomic ranges
|
2024-12-19 |
|
bioconductor-excluderanges
|
public |
Genomic coordinates of problematic genomic regions
|
2024-12-19 |
|
bioconductor-bcrank
|
public |
Predicting binding site consensus from ranked DNA sequences
|
2024-12-19 |
|
bioconductor-heatmaps
|
public |
Flexible Heatmaps for Functional Genomics and Sequence Features
|
2024-12-19 |
|
bioconductor-decipher
|
public |
Tools for curating, analyzing, and manipulating biological sequences
|
2024-12-19 |
|
bioconductor-cogeqc
|
public |
Systematic quality checks on comparative genomics analyses
|
2024-12-19 |
|
bioconductor-cnvmetrics
|
public |
Copy Number Variant Metrics
|
2024-12-19 |
|
bioconductor-biomartgogenesets
|
public |
Gene Ontology Gene Sets from BioMart
|
2024-12-19 |
|
bioconductor-elmer.data
|
public |
Data for the ELMER package
|
2024-12-19 |
|
bioconductor-gatefinder
|
public |
Projection-based Gating Strategy Optimization for Flow and Mass Cytometry
|
2024-12-19 |
|
bioconductor-annotationfilter
|
public |
Facilities for Filtering Bioconductor Annotation Resources
|
2024-12-19 |
|
bioconductor-cyanofilter
|
public |
Phytoplankton Population Identification using Cell Pigmentation and/or Complexity
|
2024-12-19 |
|
bioconductor-pwmenrich
|
public |
PWM enrichment analysis
|
2024-12-19 |
|
blockclust
|
public |
Efficient clustering and classification of non-coding RNAs from short read RNA-seq profiles.
|
2024-12-19 |
|
bioconductor-msa
|
public |
Multiple Sequence Alignment
|
2024-12-19 |
|
bioconductor-rnbeads.hg19
|
public |
RnBeads.hg19
|
2024-12-19 |
|
bioconductor-rsweep
|
public |
Spaced Words Projection (SWeeP)
|
2024-12-19 |
|
bioconductor-keggrest
|
public |
Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes (KEGG)
|
2024-12-19 |
|
bioconductor-systempiperdata
|
public |
systemPipeRdata: Workflow templates and sample data
|
2024-12-19 |
|
bioconductor-gtrellis
|
public |
Genome Level Trellis Layout
|
2024-12-19 |
|
bioconductor-iwtomics
|
public |
Interval-Wise Testing for Omics Data
|
2024-12-19 |
|
bioconductor-champdata
|
public |
Data Packages for ChAMP package
|
2024-12-19 |
|
bioconductor-gcrma
|
public |
Background Adjustment Using Sequence Information
|
2024-12-19 |
|
bioconductor-genomeintervals
|
public |
Operations on genomic intervals
|
2024-12-19 |
|
bioconductor-genomicdatacommons
|
public |
NIH / NCI Genomic Data Commons Access
|
2024-12-19 |
|
bioconductor-gdrstyle
|
public |
A package with style requirements for the gDR suite
|
2024-12-19 |
|
bioconductor-nanostringnctools
|
public |
NanoString nCounter Tools
|
2024-12-19 |
|
bioconductor-loci2path
|
public |
Loci2path: regulatory annotation of genomic intervals based on tissue-specific expression QTLs
|
2024-12-19 |
|
bioconductor-tfarm
|
public |
Transcription Factors Association Rules Miner
|
2024-12-19 |
|
bioconductor-target
|
public |
Predict Combined Function of Transcription Factors
|
2024-12-19 |
