bioconda / packages / bioconductor-pqsfinder 2.4.0

Identification of potential quadruplex forming sequences

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v2.4.0
  • osx-64  v2.4.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-pqsfinder
conda install -c bioconda/label/gcc7 bioconductor-pqsfinder
conda install -c bioconda/label/cf201901 bioconductor-pqsfinder

Description

Pqsfinder detects DNA and RNA sequence patterns that are likely to fold into an intramolecular G-quadruplex (G4). Unlike many other approaches, pqsfinder is able to detect G4s folded from imperfect G-runs containing bulges or mismatches or G4s having long loops. Pqsfinder also assigns an integer score to each hit that was fitted on G4 sequencing data and corresponds to expected stability of the folded G4.

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