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bioconductor-pwmenrich

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PWM enrichment analysis

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-pwmenrich

Usage Tracking

4.42.0
4.38.0
4.36.0
4.34.0
4.30.0
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Downloads (Last 6 months): 0

Description

A toolkit of high-level functions for DNA motif scanning and enrichment analysis built upon Biostrings. The main functionality is PWM enrichment analysis of already known PWMs (e.g. from databases such as MotifDb), but the package also implements high-level functions for PWM scanning and visualisation. The package does not perform "de novo" motif discovery, but is instead focused on using motifs that are either experimentally derived or computationally constructed by other tools.

About

Summary

PWM enrichment analysis

Last Updated

Dec 19, 2024 at 22:22

License

LGPL (>= 2)

Total Downloads

33.8K

Supported Platforms

noarch

Unsupported Platforms

linux-64 Last supported version: 4.16.0
macOS-64 Last supported version: 4.16.0