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bioconductor-miaviz
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public |
Microbiome Analysis Plotting and Visualization
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2024-12-25 |
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bioconductor-alabaster.se
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public |
Load and Save SummarizedExperiments from File
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2024-12-25 |
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bioconductor-mgnifyr
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public |
R interface to EBI MGnify metagenomics resource
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2024-12-25 |
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bioconductor-rtnduals
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public |
Analysis of co-regulation and inference of 'dual regulons'
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2024-12-25 |
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bioconductor-dar
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public |
Differential Abundance Analysis by Consensus
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2024-12-25 |
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bioconductor-fletcher2013b
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public |
Master regulators of FGFR2 signalling and breast cancer risk
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2024-12-25 |
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bioconductor-curatedmetagenomicdata
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public |
Curated Metagenomic Data of the Human Microbiome
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2024-12-25 |
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bioconductor-egad
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public |
Extending guilt by association by degree
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2024-12-25 |
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bioconductor-gse13015
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public |
GEO accession data GSE13015_GPL6106 as a SummarizedExperiment
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2024-12-25 |
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bioconductor-voyager
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public |
From geospatial to spatial omics
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2024-12-25 |
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bioconductor-gse103322
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public |
GEO accession data GSE103322 as a SingleCellExperiment
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2024-12-25 |
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bioconductor-gse62944
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public |
GEO accession data GSE62944 as a SummarizedExperiment
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2024-12-25 |
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bioconductor-dyebiasexamples
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public |
Example data for the dyebias package, which implements the GASSCO method.
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2024-12-25 |
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bioconductor-anota2seq
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public |
Generally applicable transcriptome-wide analysis of translational efficiency using anota2seq
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2024-12-25 |
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r-mams
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public |
R package for Matrix and Analysis Metadata Standards.
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2024-12-25 |
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bioconductor-zitools
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public |
Analysis of zero-inflated count data
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2024-12-25 |
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bioconductor-spaniel
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public |
Spatial Transcriptomics Analysis
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2024-12-25 |
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bioconductor-glimma
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public |
Interactive visualizations for gene expression analysis
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2024-12-25 |
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bioconductor-anaquin
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public |
Statistical analysis of sequins
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2024-12-25 |
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r-monocle3
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public |
An analysis toolkit for single-cell RNA-seq.
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2024-12-25 |
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bioconductor-ebsea
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public |
Exon Based Strategy for Expression Analysis of genes
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2024-12-25 |
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bioconductor-mia
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public |
Microbiome analysis
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2024-12-25 |
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bioconductor-scgps
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public |
A complete analysis of single cell subpopulations, from identifying subpopulations to analysing their relationship (scGPS = single cell Global Predictions of Subpopulation)
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2024-12-25 |
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r-ampvis
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public |
No Summary
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2024-12-25 |
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bioconductor-sccb2
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public |
CB2 improves power of cell detection in droplet-based single-cell RNA sequencing data
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2024-12-25 |
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r-lncpipereporter
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public |
Automatically Aggregating and Summarizing lncRNA Analysis Results for Interactive Report
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2024-12-25 |
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bioconductor-spatialfeatureexperiment
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public |
Integrating SpatialExperiment with Simple Features in sf
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2024-12-25 |
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bioconductor-vidger
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public |
Create rapid visualizations of RNAseq data in R
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2024-12-25 |
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r-riborex
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public |
Riborex is a R package for identification of differential translation from Ribo-seq data.
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2024-12-25 |
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bioconductor-deltacapturec
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public |
This Package Discovers Meso-scale Chromatin Remodeling from 3C Data
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2024-12-25 |
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bioconductor-desubs
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public |
DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experiments
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2024-12-25 |
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bioconductor-multirnaflow
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public |
An R package for integrated analysis of temporal RNA-seq data with multiple biological conditions
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2024-12-25 |
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bioconductor-dropletutils
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public |
Utilities for Handling Single-Cell Droplet Data
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2024-12-25 |
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bioconductor-pathostat
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public |
PathoStat Statistical Microbiome Analysis Package
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2024-12-25 |
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bioconductor-delocal
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public |
Identifies differentially expressed genes with respect to other local genes
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2024-12-25 |
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bioconductor-dewseq
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public |
Differential Expressed Windows Based on Negative Binomial Distribution
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2024-12-25 |
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bioconductor-netactivity
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public |
Compute gene set scores from a deep learning framework
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2024-12-25 |
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r-bulkanalyser
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public |
Given an expression matrix from a bulk sequencing experiment, pre-processes it and creates a shiny app for interactive data analysis and visualisation. The app contains quality checks, differential expression analysis, volcano and cross plots, enrichment analysis and gene regulatory network inference, and can be customised to contain more panels by the user.
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2024-12-25 |
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bioconductor-tcc
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public |
TCC: Differential expression analysis for tag count data with robust normalization strategies
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2024-12-25 |
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bioconductor-bloodcancermultiomics2017
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public |
"Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oles M, Lu J et al. - experimental data and complete analysis
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2024-12-25 |
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bioconductor-hybridexpress
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public |
Comparative analysis of RNA-seq data for hybrids and their progenitors
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2024-12-25 |
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r-empiricalfdr.deseq2
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public |
Auxiliary functions for the DESeq2 package to simulate read counts according to the null hypothesis (i.e., with empirical sample size factors, per-gene total counts and dispersions, but without effects of predictor variables) and to compute the empirical false discovery rate.
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2024-12-25 |
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bioconductor-systempipetools
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public |
Tools for data visualization
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2024-12-25 |
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r-r4cker
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public |
Analysis of 4C-seq (circularized chromosome conformation capture) data
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2024-12-25 |
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bioconductor-gg4way
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public |
4way Plots of Differential Expression
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2024-12-25 |
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bioconductor-htsfilter
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public |
Filter replicated high-throughput transcriptome sequencing data
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2024-12-25 |
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bioconductor-deformats
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public |
Differential gene expression data formats converter
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2024-12-25 |
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bioconductor-mlseq
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public |
Machine Learning Interface for RNA-Seq Data
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2024-12-25 |
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r-htssip
|
public |
Functions for analyzing high throughput sequencing stable isotope probing (HTS-SIP) data. Analyses include high resolution stable isotope probing (HR-SIP), multi-window high resolution stable isotope probing (MW-HR-SIP), and quantitative stable isotope probing (q-SIP).
|
2024-12-25 |
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bioconductor-erssa
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public |
Empirical RNA-seq Sample Size Analysis
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2024-12-25 |
