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bioconductor-voyager

Community

From geospatial to spatial omics

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-voyager

Usage Tracking

1.8.1
1.4.0
1.2.3
1.0.3
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Downloads (Last 6 months): 0

Description

SpatialFeatureExperiment (SFE) is a new S4 class for working with spatial single-cell genomics data. The voyager package implements basic exploratory spatial data analysis (ESDA) methods for SFE. Univariate methods include univariate global spatial ESDA methods such as Moran's I, permutation testing for Moran's I, and correlograms. Bivariate methods include Lee's L and cross variogram. Multivariate methods include MULTISPATI PCA and multivariate local Geary's C recently developed by Anselin. The Voyager package also implements plotting functions to plot SFE data and ESDA results.

About

Summary

From geospatial to spatial omics

Last Updated

Dec 25, 2024 at 06:49

License

Artistic-2.0

Total Downloads

4.4K

Supported Platforms

noarch