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bioconductor-spaniel

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Spatial Transcriptomics Analysis

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-spaniel

Usage Tracking

1.20.0
1.16.0
1.14.0
1.12.0
1.8.0
5 / 8 versions selected
Downloads (Last 6 months): 0

Description

Spaniel includes a series of tools to aid the quality control and analysis of Spatial Transcriptomics data. Spaniel can import data from either the original Spatial Transcriptomics system or 10X Visium technology. The package contains functions to create a SingleCellExperiment Seurat object and provides a method of loading a histologial image into R. The spanielPlot function allows visualisation of metrics contained within the S4 object overlaid onto the image of the tissue.

About

Summary

Spatial Transcriptomics Analysis

Last Updated

Dec 25, 2024 at 06:13

License

MIT + file LICENSE

Total Downloads

19.0K

Supported Platforms

noarch