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bioconductor-lpsymphony
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public |
Symphony integer linear programming solver in R
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2025-03-19 |
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bioconductor-flowworkspace
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public |
Infrastructure for representing and interacting with gated and ungated cytometry data sets.
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2025-03-19 |
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bioconductor-cellnoptr
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public |
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data
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2025-03-19 |
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bioconductor-rgadem
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public |
de novo motif discovery
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2025-03-19 |
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bioconductor-rbowtie
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public |
R bowtie wrapper
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2025-03-19 |
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bioconductor-deepsnv
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public |
Detection of subclonal SNVs in deep sequencing data.
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2025-03-19 |
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bioconductor-aseb
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public |
Predict Acetylated Lysine Sites
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2025-03-19 |
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bioconductor-beaddatapackr
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public |
Compression of Illumina BeadArray data
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2025-03-19 |
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bioconductor-tweedeseq
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public |
RNA-seq data analysis using the Poisson-Tweedie family of distributions
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2025-03-19 |
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bioconductor-mspurity
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public |
Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
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2025-03-19 |
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bioconductor-cn.mops
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public |
cn.mops - Mixture of Poissons for CNV detection in NGS data
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2025-03-19 |
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bioconductor-titancna
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public |
Subclonal copy number and LOH prediction from whole genome sequencing of tumours
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2025-03-19 |
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bioconductor-oligo
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public |
Preprocessing tools for oligonucleotide arrays
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2025-03-19 |
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bioconductor-ncdfflow
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public |
ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.
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2025-03-19 |
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bioconductor-rots
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public |
Reproducibility-Optimized Test Statistic
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2025-03-19 |
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bioconductor-mosaics
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public |
MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)
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2025-03-19 |
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bioconductor-dropletutils
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public |
Utilities for Handling Single-Cell Droplet Data
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2025-03-19 |
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bioconductor-bacon
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public |
Controlling bias and inflation in association studies using the empirical null distribution
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2025-03-19 |
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bioconductor-rqc
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public |
Quality Control Tool for High-Throughput Sequencing Data
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2025-03-13 |
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bioconductor-gsva
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public |
Gene Set Variation Analysis for Microarray and RNA-Seq Data
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2025-03-13 |
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r-ggbiplot
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public |
A biplot based on ggplot2
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2025-03-13 |
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r-lncpipereporter
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public |
Automatically Aggregating and Summarizing lncRNA Analysis Results for Interactive Report
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2025-03-13 |
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bioconductor-dada2
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public |
Accurate, high-resolution sample inference from amplicon sequencing data
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2025-03-07 |
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bioconductor-fgsea
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public |
Fast Gene Set Enrichment Analysis
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2025-02-07 |
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bioconductor-xcms
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public |
LC-MS and GC-MS Data Analysis
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2025-02-07 |
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bioconductor-camera
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public |
Collection of annotation related methods for mass spectrometry data
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2025-02-07 |
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bioconductor-massspecwavelet
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public |
Peak Detection for Mass Spectrometry data using wavelet-based algorithms
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2025-02-07 |
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bioconductor-globalancova
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public |
Global test for groups of variables via model comparisons
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2025-02-06 |
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bioconductor-msnbase
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public |
Base Functions and Classes for Mass Spectrometry and Proteomics
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2025-02-06 |
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bioconductor-multtest
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public |
Resampling-based multiple hypothesis testing
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2025-02-06 |
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bioconductor-rbgl
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public |
An interface to the BOOST graph library
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2025-02-06 |
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bioconductor-delayedarray
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public |
A unified framework for working transparently with on-disk and in-memory array-like datasets
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2025-02-06 |
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bioconductor-mzr
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public |
parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)
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2025-02-06 |
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bioconductor-affyio
|
public |
Tools for parsing Affymetrix data files
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2025-02-06 |
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bioconductor-vsn
|
public |
Variance stabilization and calibration for microarray data
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2025-02-06 |
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bioconductor-affy
|
public |
Methods for Affymetrix Oligonucleotide Arrays
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2025-02-06 |
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bioconductor-genomicranges
|
public |
Representation and manipulation of genomic intervals
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2025-02-06 |
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bioconductor-rgraphviz
|
public |
Provides plotting capabilities for R graph objects
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2025-02-06 |
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bioconductor-genefilter
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public |
genefilter: methods for filtering genes from high-throughput experiments
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2025-02-06 |
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bioconductor-graph
|
public |
graph: A package to handle graph data structures
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2025-02-06 |
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bioconductor-preprocesscore
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public |
A collection of pre-processing functions
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2025-02-06 |
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bioconductor-sva
|
public |
Surrogate Variable Analysis
|
2025-02-06 |
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bioconductor-edger
|
public |
Empirical Analysis of Digital Gene Expression Data in R
|
2025-02-06 |
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bioconductor-impute
|
public |
impute: Imputation for microarray data
|
2025-02-06 |
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r-jackstraw
|
public |
Test for association between the observed data and their systematic patterns of variations. Systematic patterns may be captured by latent variables using principal component analysis (PCA), factor analysis (FA), and related methods. The jackstraw enables statistical testing for association between observed variables and latent variables, as captured by PCs or other estimates. Similarly, unsupervised clustering, such as K-means clustering, partition around medoids (PAM), and others, finds subpopulations among the observed variables. The jackstraw estimates statistical significance of cluster membership, including unsupervised evaluation of cell identities in single cell RNA-seq. P-values and posterior probabilities allows one to rigorously evaluate the strength of cluster membership assignments.
|
2025-02-05 |
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bioconductor-biocparallel
|
public |
Bioconductor facilities for parallel evaluation
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2025-02-05 |
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bioconductor-pcamethods
|
public |
A collection of PCA methods
|
2025-02-05 |
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bioconductor-limma
|
public |
Linear Models for Microarray and Omics Data
|
2025-02-05 |
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bioconductor-biocgenerics
|
public |
S4 generic functions used in Bioconductor
|
2025-01-29 |
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bioconductor-copynumber
|
public |
Segmentation of single- and multi-track copy number data by penalized least squares regression.
|
2025-01-29 |
