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bioconda / packages / bioconductor-hmmcopy 1.44.0

Copy number prediction with correction for GC and mappability bias for HTS data

Installers

Info: This package contains files in non-standard labels.
  • linux-aarch64 v1.44.0
  • linux-64 v1.44.0
  • osx-64 v1.44.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-hmmcopy
conda install bioconda/label/cf201901::bioconductor-hmmcopy
conda install bioconda/label/gcc7::bioconductor-hmmcopy

Description

Corrects GC and mappability biases for readcounts (i.e. coverage) in non-overlapping windows of fixed length for single whole genome samples, yielding a rough estimate of copy number for furthur analysis. Designed for rapid correction of high coverage whole genome tumour and normal samples.


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