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bioconda / packages / bioconductor-dmrcate 2.12.0

Methylation array and sequencing spatial analysis methods

Installers

Info: This package contains files in non-standard labels.
  • osx-64 v1.16.0
  • linux-64 v1.16.0
  • noarch v2.12.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-dmrcate
conda install bioconda/label/cf201901::bioconductor-dmrcate
conda install bioconda/label/gcc7::bioconductor-dmrcate

Description

De novo identification and extraction of differentially methylated regions (DMRs) from the human genome using Whole Genome Bisulfite Sequencing (WGBS) and Illumina Infinium Array (450K and EPIC) data. Provides functionality for filtering probes possibly confounded by SNPs and cross-hybridisation. Includes GRanges generation and plotting functions.


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