bioconda / packages / bioconductor-dmrcate 2.4.0

Methylation array and sequencing spatial analysis methods

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.16.0
  • osx-64  v1.16.0
  • noarch  v2.4.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-dmrcate
conda install -c bioconda/label/gcc7 bioconductor-dmrcate
conda install -c bioconda/label/cf201901 bioconductor-dmrcate

Description

De novo identification and extraction of differentially methylated regions (DMRs) from the human genome using Whole Genome Bisulfite Sequencing (WGBS) and Illumina Infinium Array (450K and EPIC) data. Provides functionality for filtering probes possibly confounded by SNPs and cross-hybridisation. Includes GRanges generation and plotting functions.

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