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perl-business-isbn
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public |
work with International Standard Book Numbers
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2025-03-25 |
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perl-business-isbn-data
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public |
data pack for Business::ISBN
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2025-03-25 |
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somaticseq
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public |
An ensemble approach to accurately detect somatic mutations.
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2025-03-25 |
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starfish
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public |
Standardized analysis pipeline for image-based transcriptomics.
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2025-03-25 |
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slicedimage
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public |
Python module to access sliced imaging data
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2025-03-25 |
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regional
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public |
simple manipulation and display of spatial regions in python
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2025-03-25 |
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perl-string-truncate
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public |
a module for when strings are too long to be displayed in...
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2025-03-25 |
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perl-string-rewriteprefix
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public |
rewrite strings based on a set of known prefixes
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2025-03-25 |
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r-raceid
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public |
Application of 'RaceID' allows inference of cell types and prediction of lineage trees by the StemID2 algorithm.
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2025-03-25 |
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perl-moosex-types-stringlike
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public |
Moose type constraints for strings or string-like objects
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2025-03-25 |
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showit
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public |
simple and sensible display of images in python
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2025-03-25 |
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r-fateid
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public |
Application of 'FateID' allows computation and visualization of cell fate bias for multi-lineage single cell transcriptome data. Herman, J.S., Sagar, Grün D. (2017) <DOI:10.1038/nmeth.4662>.
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2025-03-25 |
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perl-carp-clan
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public |
Report errors from perspective of caller of a "clan" of modules
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2025-03-25 |
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perl-sub-exporter-formethods
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public |
helper routines for using Sub::Exporter to build methods
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2025-03-25 |
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perl-moosex-role-parameterized
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public |
Moose roles with composition parameters
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2025-03-25 |
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perl-test-exec
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public |
Test that some code calls exec without terminating testing
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2025-03-25 |
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perl-slurp
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public |
Slurp entire files into variables
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2025-03-25 |
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perl-term-table
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public |
Format a header and rows into a table
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2025-03-25 |
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perl-sub-info
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public |
Tool for inspecting subroutines.
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2025-03-25 |
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perl-module-pluggable
|
public |
automatically give your module the ability to have plugins
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2025-03-25 |
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perl-return-multilevel
|
public |
return across multiple call levels
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2025-03-25 |
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perl-data-munge
|
public |
various utility functions
|
2025-03-25 |
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masurca
|
public |
MaSuRCA (Maryland Super-Read Celera Assembler) genome assembly software. MaSuRCA requires Illumina data, and supports third-generation PacBio/Nanopore MinION reads for hybrid assembly.
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2025-03-25 |
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perl-module-util
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public |
Module name tools and transformations
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2025-03-25 |
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perl-import-into
|
public |
Import packages into other packages
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2025-03-25 |
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spaln
|
public |
Map and align a set of cDNA/EST or protein sequences onto a genome
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2025-03-25 |
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r-fastqcr
|
public |
'FASTQC' is the most widely used tool for evaluating the quality of high throughput sequencing data. It produces, for each sample, an html report and a compressed file containing the raw data. If you have hundreds of samples, you are not going to open up each 'HTML' page. You need some way of looking at these data in aggregate. 'fastqcr' Provides helper functions to easily parse, aggregate and analyze 'FastQC' reports for large numbers of samples. It provides a convenient solution for building a 'Multi-QC' report, as well as, a 'one-sample' report with result interpretations.
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2025-03-25 |
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perl-file-copy-recursive-reduced
|
public |
Recursive copying of files and directories within Perl 5 toolchain
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2025-03-25 |
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perl-moosex-role-withoverloading
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public |
(DEPRECATED) Roles which support overloading
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2025-03-25 |
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perl-getopt-long-descriptive
|
public |
Getopt::Long, but simpler and more powerful
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2025-03-25 |
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perl-env
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public |
perl module that imports environment variables as scalars or arrays
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2025-03-25 |
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methylextract
|
public |
High-Quality methylation maps and SNV calling from whole genome bisulfite sequencing data
|
2025-03-25 |
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r-intego
|
public |
An unsupervised gene clustering algorithm based on the integration of external biological knowledge, such as Gene Ontology annotations, into expression data.
|
2025-03-25 |
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pb-assembly
|
public |
Meta-package for Falcon/Unzip tool-suite (originally by Jason Chin)
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2025-03-25 |
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perl-biox-seq
|
public |
a basic but fast biological sequence object and associated parsers
|
2025-03-25 |
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perl-test-cleannamespaces
|
public |
Check for uncleaned imports
|
2025-03-25 |
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perl-cpan-meta-requirements
|
public |
a set of version requirements for a CPAN dist
|
2025-03-25 |
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perl-devel-overloadinfo
|
public |
introspect overloaded operators
|
2025-03-25 |
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perl-test-needs
|
public |
Skip tests when modules not available
|
2025-03-25 |
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perl-mro-compat
|
public |
mro::* interface compatibility for Perls < 5.9.5
|
2025-03-25 |
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perl-module-runtime-conflicts
|
public |
Provide information on conflicts for Module::Runtime
|
2025-03-25 |
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perl-file-pushd
|
public |
change directory temporarily for a limited scope
|
2025-03-25 |
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perl-package-deprecationmanager
|
public |
Manage deprecation warnings for your distribution
|
2025-03-25 |
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perl-compress-bgzf
|
public |
Read/write blocked GZIP (BGZF) files
|
2025-03-25 |
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pbalign
|
public |
Python wrapper for producing PBBAM valid alignments
|
2025-03-25 |
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python-intervaltree
|
public |
Faster than intervaltree_bio
|
2025-03-25 |
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python-sortedcontainers
|
public |
sorted collections library, written in pure-Python, and fast as C-extensions
|
2025-03-25 |
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minorseq
|
public |
Minor Variant Calling and Phasing Tools
|
2025-03-25 |
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biobb_io
|
public |
Biobb_io is the Biobb module collection to fetch data to be consumed by the rest of the Biobb building blocks.
|
2025-03-25 |
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gffmunger
|
public |
Munges GFF3 files exported from Chado database to make them suitable for loading into WebApollo
|
2025-03-25 |
