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biobb_io
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public |
Biobb_io is the Biobb module collection to fetch data to be consumed by the rest of the Biobb building blocks.
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2025-03-25 |
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gffmunger
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public |
Munges GFF3 files exported from Chado database to make them suitable for loading into WebApollo
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2025-03-25 |
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bioconductor-hiccompare
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public |
HiCcompare: Joint normalization and comparative analysis of multiple Hi-C datasets
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2025-03-25 |
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neurodocker
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public |
Neurodocker is a command-line program that generates custom Dockerfiles and Singularity recipes for neuroimaging and minifies existing containers.
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2025-03-25 |
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pb-falcon
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public |
FALCON/Unzip tool-suite (originally by Jason Chin)
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2025-03-25 |
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python-msgpack
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public |
It's like JSON. But fast and small.
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2025-03-25 |
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perl-unicode-utf8
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public |
Encoding and decoding of UTF-8 encoding form
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2025-03-25 |
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pbmm2
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public |
A minimap2 frontend for PacBio native data formats
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2025-03-25 |
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plasflow
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public |
PlasFlow - predicting plasmid sequences in metagenomic data
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2025-03-25 |
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sumaclust
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public |
Sumaclust clusters sequences in a way that is fast and exact at the same time, using the same clustering algorithm as UCLUST and CD-HIT. For more information see url.
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2025-03-25 |
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vargeno
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public |
Fast SNP genotyping tool for whole genome sequence data and large SNP database.
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2025-03-25 |
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python-consensuscore2
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public |
PacBio Arrow Consensus library for Sequel data
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2025-03-25 |
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tagger
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public |
tagger allows you to tag a corpus of documents with search terms that you provide. It is often used to find mentions of proteins, species, diseases, tissues, chemicals and drugs, GO terms, and so forth, in articles in the Medline corpus.
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2025-03-25 |
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cnvetti
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public |
CNVetti is a CNV caller from HTS data.
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2025-03-25 |
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ditasic
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public |
DiTASiC is designed as a comprehensive approach for abundance estimation and differential abundance assessment of individual taxa in metagenomics samples.
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2025-03-25 |
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pbccs
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public |
pbccs - Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
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2025-03-25 |
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banner
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public |
BANNER is a tool that lives inside HULK and aims to make sense of hulk histosketches.
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2025-03-25 |
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biobb_common
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public |
Biobb_common is the base package required to use the biobb packages.
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2025-03-25 |
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ksw
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public |
Ksw: (interactive) smith-waterman in C
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2025-03-25 |
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bioconductor-zinbwave
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public |
Zero-Inflated Negative Binomial Model for RNA-Seq Data
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2025-03-25 |
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tandem-genotypes
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public |
Find tandem repeat length changes, from "long" DNA reads aligned to a genome
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2025-03-25 |
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perl-bio-tools-run-alignment-tcoffee
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public |
Object for the calculation of a multiple sequence alignment from a set of unaligned sequences or alignments using the TCoffee program
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2025-03-25 |
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perl-bio-tools-phylo-paml
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public |
Parses output from the PAML programs codeml, baseml, basemlg, codemlsites and yn00
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2025-03-25 |
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perl-bio-tools-run-alignment-clustalw
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public |
Object for the calculation of a multiple sequence alignment from a set of unaligned sequences or alignments using the Clustalw program
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2025-03-25 |
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perl-bio-coordinate
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public |
Methods for dealing with genomic coordinates.
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2025-03-25 |
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pb-dazzler
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public |
The Dresden Assembler suite -- Pacific Biosciences forks
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2025-03-25 |
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t-coffee
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public |
A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence
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2025-03-25 |
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pbsv
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public |
pbsv - PacBio structural variant (SV) calling and analysis tools
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2025-03-25 |
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perl-test-requiresinternet
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public |
Easily test network connectivity
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2025-03-25 |
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nim-falcon
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public |
Nim-based executables used by Falcon assembly workflow
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2025-03-25 |
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faqcs
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public |
Quality Control of Next Generation Sequencing Data.
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2025-03-25 |
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hulk
|
public |
Histosketching Using Little Kmers
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2025-03-25 |
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xhmm
|
public |
XHMM (eXome-Hidden Markov Model).
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2025-03-25 |
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centroid_rna_package
|
public |
Collection of RNA secondary structure prediction programs based on gamma-centroid estimator (Hamada et. al. 2009)
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2025-03-25 |
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perl-test-memory-cycle
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public |
Verifies code hasn't left circular references
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2025-03-25 |
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perl-devel-cycle
|
public |
Find memory cycles in objects
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2025-03-25 |
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perl-padwalker
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public |
play with other peoples' lexical variables
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2025-03-25 |
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novasplice
|
public |
NovaSplice is a python tool to predict novel intronic splice sites from a given VCF file
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2025-03-25 |
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perl-test-fork
|
public |
test code which forks
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2025-03-25 |
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genenotebook
|
public |
A colleborative notebook for comparative genomics
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2025-03-25 |
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fastqe
|
public |
A emoji based bioinformatics command line tool.
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2025-03-25 |
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perl-graphics-colorobject
|
public |
convert between color spaces
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2025-03-25 |
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perl-graphics-colornames
|
public |
defines RGB values for common color names
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2025-03-25 |
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perl-module-loaded
|
public |
Mark modules as loaded/unloaded
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2025-03-25 |
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lordfast
|
public |
Sensitive and Fast Alignment Search Tool for Long Read sequencing Data
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2025-03-25 |
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connectome-workbench
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public |
Connectome Workbench is an open source, freely available visualization and discovery tool used to map neuroimaging data, especially data generated by the Human Connectome Project
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2025-03-25 |
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slamdunk
|
public |
Slamdunk is a software tool for SLAMseq data analysis.
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2025-03-25 |
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deepbinner
|
public |
A signal-level demultiplexer for Oxford Nanopore reads.
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2025-03-25 |
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phantompeakqualtools
|
public |
This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to obtain robust estimates of the predominant fragment length or characteristic tag shift values in these assays.
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2025-03-25 |
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hotspot3d
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public |
This 3D proximity tool can be used to identify mutation hotspots from linear protein sequence and correlate the hotspots with known or potentially interacting domains, mutations, or drugs. Mutation-mutation and mutation-drug clusters can also be identified and viewed.
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2025-03-25 |
