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ucsc-ave
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public |
Compute average and basic stats
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2025-04-22 |
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cgat-pipelines-nosetests
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public |
Metapackage to test CGAT Pipelines
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2025-04-22 |
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cgat-scripts-nosetests
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public |
Computational Genomics Analysis Toolkit
|
2025-04-22 |
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bioconductor-egsea
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public |
Ensemble of Gene Set Enrichment Analyses
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2025-04-22 |
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bioconductor-egseadata
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public |
Gene set collections for the EGSEA package
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2025-04-22 |
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bioconductor-padog
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public |
Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)
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2025-04-22 |
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bioconductor-hgu133plus2.db
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public |
Affymetrix Affymetrix HG-U133_Plus_2 Array annotation data (chip hgu133plus2)
|
2025-04-22 |
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bioconductor-hgu133a.db
|
public |
Affymetrix Affymetrix HG-U133A Array annotation data (chip hgu133a)
|
2025-04-22 |
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bioconductor-glimma
|
public |
Interactive visualizations for gene expression analysis
|
2025-04-22 |
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bioconductor-keggdzpathwaysgeo
|
public |
KEGG Disease Datasets from GEO
|
2025-04-22 |
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bioconductor-scpipe
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public |
Pipeline for single cell multi-omic data pre-processing
|
2025-04-22 |
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bioconductor-snpchip
|
public |
Visualizations for copy number alterations
|
2025-04-22 |
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bioconductor-lumi
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public |
BeadArray Specific Methods for Illumina Methylation and Expression Microarrays
|
2025-04-22 |
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bioconductor-altcdfenvs
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public |
alternative CDF environments (aka probeset mappings)
|
2025-04-22 |
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pfam_scan
|
public |
pfam_scan.pl is a Perl script calling HMMER v3 to search a FASTA file against a library of Pfam HMMs.
|
2025-04-22 |
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bioconductor-derfinder
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public |
Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach
|
2025-04-22 |
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bioconductor-chimera
|
public |
A package for secondary analysis of fusion products
|
2025-04-22 |
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tracer
|
public |
Tracer is a program for analysing the trace files generated by Bayesian MCMC runs (that is, the continuous parameter values sampled from the chain). It can be used to analyse runs of BEAST, MrBayes, LAMARC and possibly other MCMC programs.
|
2025-04-22 |
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bioconductor-hypergraph
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public |
A package providing hypergraph data structures
|
2025-04-22 |
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strainest
|
public |
Abundance estimation of strains
|
2025-04-22 |
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bioconductor-genbankr
|
public |
Parsing GenBank files into semantically useful objects
|
2025-04-22 |
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bioconductor-genomicfiles
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public |
Distributed computing by file or by range
|
2025-04-22 |
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r-snpassoc
|
public |
This package carries out most common analysis when performing whole genome association studies. These analyses include descriptive statistics and exploratory analysis of missing values, calculation of Hardy-Weinberg equilibrium, analysis of association based on generalized linear models (either for quantitative or binary traits), and analysis of multiple SNPs (haplotype and epistasis analysis). Permutation test and related tests (sum statistic and truncated product) are also implemented. Max-statistic and genetic risk-allele score exact distributions are also possible to be estimated.
|
2025-04-22 |
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consensusfixer
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public |
Computes a consensus sequence with wobbles, ambiguous bases, and in-frame insertions, from a NGS read alignment.
|
2025-04-22 |
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r-ggsignif
|
public |
Enrich your 'ggplots' with group-wise comparisons. This package provides an easy way to indicate if two groups are significantly different. Commonly this is shown by a bracket on top connecting the groups of interest which itself is annotated with the level of significance (NS, *, **, ***). The package provides a single layer (geom_signif()) that takes the groups for comparison and the test (t.test(), wilcox.text() etc.) as arguments and adds the annotation to the plot.
|
2025-04-22 |
