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snap
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public |
Semi-HMM-based Nucleic Acid Parser -- gene prediction tool
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2023-06-16 |
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bio_assembly_refinement
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public |
Assembly refinement tools, mostly useful for (but not limited to) pacbio bacterial assemblies
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2023-06-16 |
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perl-xml-parser
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public |
A perl module for parsing XML documents
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2023-06-16 |
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perl-html-template
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public |
Perl module to use HTML-like templating language
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2023-06-16 |
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perl-statistics-ttest
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public |
Perl module to perform T-test on 2 independent samples Statistics::TTest::Sufficient - Perl module to perfrom T-Test on 2 indepdent samples using sufficient statistics
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2023-06-16 |
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perl-xml-namespacesupport
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public |
a simple generic namespace support class
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2023-06-16 |
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perl-xml-sax-base
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public |
Base class for SAX Drivers and Filters
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2023-06-16 |
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flask-markdown
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public |
Small extension to make using markdown easy
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2023-06-16 |
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r-pracma
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public |
Functions from numerical analysis and linear algebra, numerical optimization, differential equations, plus some special functions. Uses Matlab function names where appropriate to simplify porting.
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2023-06-16 |
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perl-xml-sax
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public |
Simple API for XML
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2023-06-16 |
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perl-timedate
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public |
Date formating subroutines
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2023-06-16 |
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yamllint
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public |
A linter for YAML files.
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2023-06-16 |
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r-base64
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public |
Base 64 encoder/decoder
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2023-06-16 |
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openbabel
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public |
Open Babel is a chemical toolbox designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or related areas.
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2023-06-16 |
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flux-simulator
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public |
Tool for modeling RNA-Seq experiments in silico
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2023-06-16 |
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jq
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public |
jq is a lightweight and flexible command-line JSON processor.
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2023-06-16 |
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ceas
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public |
CEAS: Cis-regulatory Element Annotation System
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2023-06-16 |
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bioconductor-jmosaics
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public |
jmosaics detects enriched regions of ChIP-seq data sets jointly.
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2023-06-16 |
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perl-yaml
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public |
YAML Ain't Markup Language™
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2023-06-16 |
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r-batch
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public |
Functions to allow you to easily pass command-line arguments into R, and functions to aid in submitting your R code in parallel on a cluster and joining the results afterward (e.g. multiple parameter values for simulations running in parallel, splitting up a permutation test in parallel, etc.). See `parseCommandArgs(...)' for the main example of how to use this package.
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2023-06-16 |
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validictory
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public |
general purpose python data validator
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2023-06-16 |
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tesseract
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public |
OCR engine
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2023-06-16 |
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ocrad
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public |
Ocrad is an optical character recognition program.
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2023-06-16 |
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libsvm
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public |
LIBSVM is an integrated software for support vector classification, (C-SVC,nu-SVC), regression (epsilon-SVR, nu-SVR) and distribution estimation(one-class SVM). It supports multi-class classification.http://www.csie.ntu.edu.tw/~cjlin/libsvm/
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2023-06-16 |
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tclap
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public |
TCLAP is a small, flexible library that provides a simple interface for defining and accessing command line arguments.
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2023-06-16 |
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leptonica
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public |
Leptonica is a pedagogically-oriented open source site containing software that is broadly useful for image processing and image analysis applications.
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2023-06-16 |
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opsin
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public |
OPSIN is a Java(1.6+) library for IUPAC name-to-structure conversion offering high recall and precision on organic chemical nomenclature.
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2023-06-16 |
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r-idr
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public |
This is a package for estimating the copula mixture model and plotting correspondence curves in "Measuring reproducibility of high-throughput experiments" (2011), Annals of Applied Statistics, Vol. 5, No. 3, 1752-1779, by Li, Brown, Huang, and Bickel
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2023-06-16 |
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gdal
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public |
Geospatial Data Abstraction Library
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2023-06-16 |
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osra
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public |
OSRA is a utility designed to convert graphical representations of chemical structures, as they appear in journal articles, patent documents, textbooks, trade magazines etc., into SMILES or SDF.
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2023-06-16 |
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r-readr
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public |
Read flat/tabular text files from disk (or a connection).
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2023-06-16 |
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dreamtools
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public |
Scoring functions for the DREAM / SAGE challenges
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2023-06-16 |
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colorbrewer
|
public |
An easy way to get access to ColorBrewer schemes from within a Python program
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2023-06-16 |
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schema-salad
|
public |
Schema Annotations for Linked Avro Data (SALAD)
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2023-06-16 |
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phylotoast
|
public |
No Summary
|
2023-06-16 |
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r-rniftyreg
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public |
Provides an R interface to the NiftyReg image registration tools <http://sourceforge.net/projects/niftyreg/>. Linear and nonlinear registration are supported, in two and three dimensions.
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2023-06-16 |
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sqlalchemy-utils
|
public |
Various utility functions for SQLAlchemy.
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2023-06-16 |
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r-plotrix
|
public |
No Summary
|
2023-06-16 |
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r-tiff
|
public |
This package provides an easy and simple way to read, write and display bitmap images stored in the TIFF format. It can read and write both files and in-memory raw vectors.
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2023-06-16 |
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r-bit
|
public |
bitmapped vectors of booleans (no NAs), coercion from and to logicals, integers and integer subscripts; fast boolean operators and fast summary statistics. With 'bit' vectors you can store true binary booleans {FALSE,TRUE} at the expense of 1 bit only, on a 32 bit architecture this means factor 32 less RAM and ~ factor 32 more speed on boolean operations. Due to overhead of R calls, actual speed gain depends on the size of the vector: expect gains for vectors of size > 10000 elements. Even for one-time boolean operations it can pay-off to convert to bit, the pay-off is obvious, when such components are used more than once. Reading from and writing to bit is approximately as fast as accessing standard logicals - mostly due to R's time for memory allocation. The package allows to work with pre-allocated memory for return values by calling .Call() directly: when evaluating the speed of C-access with pre-allocated vector memory, coping from bit to logical requires only 70% of the time for copying from logical to logical; and copying from logical to bit comes at a performance penalty of 150%. the package now contains further classes for representing logical selections: 'bitwhich' for very skewed selections and 'ri' for selecting ranges of values for chunked processing. All three index classes can be used for subsetting 'ff' objects (ff-2.1-0 and higher).
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2023-06-16 |
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lapack
|
public |
Linear Algebra PACKage
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2023-06-16 |
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r-png
|
public |
This package provides an easy and simple way to read, write and display bitmap images stored in the PNG format. It can read and write both files and in-memory raw vectors.
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2023-06-16 |
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r-batchjobs
|
public |
Provides Map, Reduce and Filter variants to generate jobs on batch computing systems like PBS/Torque, LSF, SLURM and Sun Grid Engine. Multicore and SSH systems are also supported. For further details see the project web page.
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2023-06-16 |
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biokit
|
public |
Set of visualisation and analysis tools for biological data sets
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2023-06-16 |
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r-abind
|
public |
Combine multidimensional arrays into a single array. This is a generalization of 'cbind' and 'rbind'. Works with vectors, matrices, and higher-dimensional arrays. Also provides functions 'adrop', 'asub', and 'afill' for manipulating, extracting and replacing data in arrays.
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2023-06-16 |
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strip_it
|
public |
Strip-it is a program that extracts predefined scaffolds from organic small molecules.
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2023-06-16 |
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r-knitrbootstrap
|
public |
A framework to create Bootstrap 3 HTML reports from knitr Rmarkdown.
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2023-06-16 |
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stride
|
public |
The StriDe Assembler integrates string and de Bruijn graph by decomposing reads within error-prone regions, while extending paire-end read into long reads for assembly through repetitive regions.
|
2023-06-16 |
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r-jpeg
|
public |
This package provides an easy and simple way to read, write and display bitmap images stored in the JPEG format. It can read and write both files and in-memory raw vectors.
|
2023-06-16 |
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r-svgui
|
public |
Functions to manage GUIs from R
|
2023-06-16 |
