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bioconductor-gotools
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public |
Functions for Gene Ontology database
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2024-12-25 |
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bioconductor-adsplit
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public |
Annotation-Driven Clustering
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2024-12-25 |
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bioconductor-gage
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public |
Generally Applicable Gene-set Enrichment for Pathway Analysis
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2024-12-25 |
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bioconductor-annaffy
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public |
Annotation tools for Affymetrix biological metadata
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2024-12-25 |
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bioconductor-topgo
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public |
Enrichment Analysis for Gene Ontology
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2024-12-25 |
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bioconductor-illuminamousev2.db
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public |
Illumina MouseWG6v2 annotation data (chip illuminaMousev2) assembled using data from public repositories
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2024-12-25 |
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bioconductor-mgug4122a.db
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public |
Agilent "Mouse Genome, Whole" annotation data (chip mgug4122a) assembled using data from public repositories
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2024-12-25 |
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bioconductor-easyrnaseq
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public |
Count summarization and normalization for RNA-Seq data
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2024-12-25 |
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fusion-inspector
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public |
FusionInspector is a component of the Trinity Cancer Transcriptome Analysis Toolkit (CTAT). FusionInspector assists in fusion transcript discovery by performing a supervised analysis of fusion predictions, attempting to recover and re-score evidence for such predictions. - https://github.com/FusionInspector/FusionInspector/wiki
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2024-12-25 |
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bioconductor-mirnatap.db
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public |
This package holds the database for miRNAtap.
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2024-12-25 |
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bioconductor-curatedmetagenomicdata
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public |
Curated Metagenomic Data of the Human Microbiome
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2024-12-25 |
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bioconductor-glimma
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public |
Interactive visualizations for gene expression analysis
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2024-12-25 |
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bioconductor-ebsea
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public |
Exon Based Strategy for Expression Analysis of genes
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2024-12-25 |
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r-ampvis
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public |
No Summary
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2024-12-25 |
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r-lncpipereporter
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public |
Automatically Aggregating and Summarizing lncRNA Analysis Results for Interactive Report
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2024-12-25 |
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bioconductor-dropletutils
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public |
Utilities for Handling Single-Cell Droplet Data
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2024-12-25 |
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bioconductor-pathostat
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public |
PathoStat Statistical Microbiome Analysis Package
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2024-12-25 |
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bioconductor-tcc
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public |
TCC: Differential expression analysis for tag count data with robust normalization strategies
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2024-12-25 |
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r-empiricalfdr.deseq2
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public |
Auxiliary functions for the DESeq2 package to simulate read counts according to the null hypothesis (i.e., with empirical sample size factors, per-gene total counts and dispersions, but without effects of predictor variables) and to compute the empirical false discovery rate.
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2024-12-25 |
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bioconductor-htsfilter
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public |
Filter replicated high-throughput transcriptome sequencing data
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2024-12-25 |
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bioconductor-deformats
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public |
Differential gene expression data formats converter
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2024-12-25 |
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bioconductor-mlseq
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public |
Machine Learning Interface for RNA-Seq Data
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2024-12-25 |
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r-htssip
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public |
Functions for analyzing high throughput sequencing stable isotope probing (HTS-SIP) data. Analyses include high resolution stable isotope probing (HR-SIP), multi-window high resolution stable isotope probing (MW-HR-SIP), and quantitative stable isotope probing (q-SIP).
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2024-12-25 |
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bioconductor-degreport
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public |
Report of DEG analysis
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2024-12-25 |
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bioconductor-mast
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public |
Model-based Analysis of Single Cell Transcriptomics
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2024-12-24 |
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bioconductor-sc3
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public |
Single-Cell Consensus Clustering
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2024-12-24 |
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bioconductor-rgsepd
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public |
Gene Set Enrichment / Projection Displays
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2024-12-24 |
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bioconductor-smite
|
public |
Significance-based Modules Integrating the Transcriptome and Epigenome
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2024-12-24 |
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bioconductor-goseq
|
public |
Gene Ontology analyser for RNA-seq and other length biased data
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2024-12-24 |
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bioconductor-isee
|
public |
Interactive SummarizedExperiment Explorer
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2024-12-24 |
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bioconductor-probamr
|
public |
Generating SAM file for PSMs in shotgun proteomics data
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2024-12-24 |
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bioconductor-scnorm
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public |
Normalization of single cell RNA-seq data
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2024-12-24 |
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bioconductor-switchde
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public |
Switch-like differential expression across single-cell trajectories
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2024-12-24 |
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bioconductor-recoup
|
public |
An R package for the creation of complex genomic profile plots
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2024-12-24 |
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bioconductor-organismdbi
|
public |
Software to enable the smooth interfacing of different database packages
|
2024-12-24 |
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bioconductor-crlmm
|
public |
Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays
|
2024-12-24 |
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bioconductor-genelendatabase
|
public |
Lengths of mRNA transcripts for a number of genomes
|
2024-12-24 |
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bioconductor-omicade4
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public |
Multiple co-inertia analysis of omics datasets
|
2024-12-24 |
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bioconductor-mygene
|
public |
Access MyGene.Info_ services
|
2024-12-24 |
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bioconductor-hiccompare
|
public |
HiCcompare: Joint normalization and comparative analysis of multiple Hi-C datasets
|
2024-12-24 |
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bioconductor-baalchip
|
public |
BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes
|
2024-12-24 |
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bioconductor-mgfr
|
public |
Marker Gene Finder in RNA-seq data
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2024-12-24 |
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r-rapidr
|
public |
Package to perform non-invasive fetal testing for aneuploidies using sequencing count data from cell-free DNA
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2024-12-24 |
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bioconductor-pics
|
public |
Probabilistic inference of ChIP-seq
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2024-12-24 |
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bioconductor-genomicfeatures
|
public |
Query the gene models of a given organism/assembly
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2024-12-24 |
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r-exomedepth
|
public |
Calls copy number variants (CNVs) from targeted sequence data, typically exome sequencing experiments designed to identify the genetic basis of Mendelian disorders.
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2024-12-24 |
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bioconductor-crisprvariants
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public |
Tools for counting and visualising mutations in a target location
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2024-12-24 |
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bioconductor-prebs
|
public |
Probe region expression estimation for RNA-seq data for improved microarray comparability
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2024-12-24 |
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bioconductor-mosaics
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public |
MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)
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2024-12-24 |
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bioconductor-qdnaseq.mm10
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public |
Bin annotation mm10
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2024-12-24 |
