| Package Name | Access | Summary | Updated |
|---|---|---|---|
| bioconductor-biosvd | public | Package for high-throughput data processing, outlier detection, noise removal and dynamic modeling | 2025-04-22 |
| bioconductor-hopach | public | Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH) | 2025-04-22 |
| bioconductor-biomvcclass | public | Model-View-Controller (MVC) Classes That Use Biobase | 2025-04-22 |
| bioconductor-hybridmtest | public | Hybrid Multiple Testing | 2025-04-22 |
| bioconductor-htseqtools | public | We provide efficient, easy-to-use tools for High-Throughput Sequencing (ChIP-seq, RNAseq etc.). These include MDS plots (analogues to PCA), detecting inefficient immuno-precipitation or over-amplification artifacts, tools to identify and test for genomic regions with large accumulation of reads, and visualization of coverage profiles. | 2025-04-22 |
| bioconductor-hyperdraw | public | Visualizing Hypergaphs | 2025-04-22 |
| bioconductor-hitc | public | High Throughput Chromosome Conformation Capture analysis | 2025-04-22 |
| bioconductor-chipxpress | public | ChIPXpress: enhanced transcription factor target gene identification from ChIP-seq and ChIP-chip data using publicly available gene expression profiles | 2025-04-22 |
| bioconductor-hem | public | Heterogeneous error model for identification of differentially expressed genes under multiple conditions | 2025-04-22 |
| bioconductor-help | public | Tools for HELP data analysis | 2025-04-22 |
| bioconductor-harshlight | public | A "corrective make-up" program for microarray chips | 2025-04-22 |
| bioconductor-harman | public | The removal of batch effects from datasets using a PCA and constrained optimisation based technique | 2025-04-22 |
| bioconductor-gsreg | public | Gene Set Regulation (GS-Reg) | 2025-04-22 |
| bioconductor-gsri | public | Gene Set Regulation Index | 2025-04-22 |
| bioconductor-chipxpressdata | public | ChIPXpress Pre-built Databases | 2025-04-22 |
| bioconductor-gsealm | public | Linear Model Toolset for Gene Set Enrichment Analysis | 2025-04-22 |
| perl-test-object | public | Thoroughly testing objects via registered handlers | 2025-04-22 |
| bioconductor-gsca | public | GSCA: Gene Set Context Analysis | 2025-04-22 |
| bioconductor-grmetrics | public | Calculate growth-rate inhibition (GR) metrics | 2025-04-22 |
| bioconductor-gsalightning | public | Fast Permutation-based Gene Set Analysis | 2025-04-22 |
| bioconductor-graphat | public | Graph Theoretic Association Tests | 2025-04-22 |
| bioconductor-chipsim | public | Simulation of ChIP-seq experiments | 2025-04-22 |
| bioconductor-gpls | public | Classification using generalized partial least squares | 2025-04-22 |
| perl-file-remove | public | Remove files and directories | 2025-04-22 |
| bioconductor-watermelon | public | Illumina DNA methylation array normalization and metrics | 2025-04-22 |
