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bioconductor-harman

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The removal of batch effects from datasets using a PCA and constrained optimisation based technique

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-harman

Usage Tracking

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Description

Harman is a PCA and constrained optimisation based technique that maximises the removal of batch effects from datasets, with the constraint that the probability of overcorrection (i.e. removing genuine biological signal along with batch noise) is kept to a fraction which is set by the end-user.

About

Summary

The removal of batch effects from datasets using a PCA and constrained optimisation based technique

Last Updated

Dec 14, 2024 at 15:11

License

GPL-3 + file LICENCE

Total Downloads

45.0K

Supported Platforms

linux-64
macOS-64