bioconda / packages / bioconductor-chipxpress 1.38.0

ChIPXpress: enhanced transcription factor target gene identification from ChIP-seq and ChIP-chip data using publicly available gene expression profiles

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.24.0
  • osx-64  v1.24.0
  • noarch  v1.38.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-chipxpress
conda install -c bioconda/label/gcc7 bioconductor-chipxpress
conda install -c bioconda/label/cf201901 bioconductor-chipxpress

Description

ChIPXpress takes as input predicted TF bound genes from ChIPx data and uses a corresponding database of gene expression profiles downloaded from NCBI GEO to rank the TF bound targets in order of which gene is most likely to be functional TF target.


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