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bioconda / packages / bioconductor-hopach 2.62.0

Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH)

Installers

Info: This package contains files in non-standard labels.
  • osx-64 v2.62.0
  • linux-64 v2.62.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-hopach
conda install bioconda/label/cf201901::bioconductor-hopach
conda install bioconda/label/gcc7::bioconductor-hopach

Description

The HOPACH clustering algorithm builds a hierarchical tree of clusters by recursively partitioning a data set, while ordering and possibly collapsing clusters at each level. The algorithm uses the Mean/Median Split Silhouette (MSS) criteria to identify the level of the tree with maximally homogeneous clusters. It also runs the tree down to produce a final ordered list of the elements. The non-parametric bootstrap allows one to estimate the probability that each element belongs to each cluster (fuzzy clustering).


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