bioconda / packages / bioconductor-hopach 2.50.0

Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH)


Info: This package contains files in non-standard labels.

conda install

  • linux-64  v2.50.0
  • osx-64  v2.50.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-hopach
conda install -c bioconda/label/gcc7 bioconductor-hopach
conda install -c bioconda/label/cf201901 bioconductor-hopach


The HOPACH clustering algorithm builds a hierarchical tree of clusters by recursively partitioning a data set, while ordering and possibly collapsing clusters at each level. The algorithm uses the Mean/Median Split Silhouette (MSS) criteria to identify the level of the tree with maximally homogeneous clusters. It also runs the tree down to produce a final ordered list of the elements. The non-parametric bootstrap allows one to estimate the probability that each element belongs to each cluster (fuzzy clustering).

PRIVACY POLICY  |  EULA (Anaconda Cloud v2.33.29) © 2020 Anaconda, Inc. All Rights Reserved.