bioconda / packages / bioconductor-harshlight 1.66.0

A "corrective make-up" program for microarray chips

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.66.0
  • osx-64  v1.66.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-harshlight
conda install -c bioconda/label/gcc7 bioconductor-harshlight
conda install -c bioconda/label/cf201901 bioconductor-harshlight

Description

The package is used to detect extended, diffuse and compact blemishes on microarray chips. Harshlight automatically marks the areas in a collection of chips (affybatch objects) and a corrected AffyBatch object is returned, in which the defected areas are substituted with NAs or the median of the values of the same probe in the other chips in the collection. The new version handle the substitute value as whole matrix to solve the memory problem.


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