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biobb_io
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public |
Biobb_io is the Biobb module collection to fetch data to be consumed by the rest of the Biobb building blocks.
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2025-09-04 |
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kraken2
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public |
Kraken2 is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies.
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2025-09-04 |
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goleft
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public |
goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary
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2025-09-04 |
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gridss
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public |
GRIDSS: the Genomic Rearrangement IDentification Software Suite
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2025-09-04 |
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grabix
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public |
a wee tool for random access into BGZF files.
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2025-09-04 |
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umis
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public |
Tools for processing UMI RNA-tag data
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2025-09-04 |
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atropos
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public |
trim adapters from high-throughput sequencing reads
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2025-09-04 |
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hmmcopy
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public |
C++ based programs for analyzing BAM files and preparing read counts -- used with bioconductor-hmmcopy
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2025-09-04 |
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mawk
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public |
mawk is an interpreter for the AWK Programming Language.
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2025-09-04 |
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haploclique
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public |
Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletions from NGS data.
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2025-09-04 |
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r-classdiscovery
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public |
Defines the classes used for "class discovery" problems in the OOMPA project (<http://oompa.r-forge.r-project.org/>). Class discovery primarily consists of unsupervised clustering methods with attempts to assess their statistical significance.
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2025-09-04 |
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nanopolish
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public |
Signal-level algorithms for MinION data.
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2025-09-04 |
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fasttree
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public |
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences.
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2025-09-04 |
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pyfaidx
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public |
pyfaidx: efficient pythonic random access to fasta subsequences
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2025-09-03 |
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chewbbaca
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public |
A complete suite for gene-by-gene schema creation and strain identification.
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2025-09-03 |
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biobb_common
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public |
Biobb_common is the base package required to use the biobb packages.
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2025-09-03 |
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genomedata
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public |
Tools for accessing large amounts of genomic data.
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2025-09-02 |
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pureclip
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public |
PureCLIP is a tool to detect protein-RNA interaction footprints from single-nucleotide CLIP-seq data, such as iCLIP and eCLIP.
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2025-09-02 |
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perl-term-table
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public |
Format a header and rows into a table
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2025-09-02 |
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rgi
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public |
This tool provides a preliminary annotation of your DNA sequence(s) based upon the data available in The Comprehensive Antibiotic Resistance Database (CARD). Hits to genes tagged with Antibiotic Resistance ontology terms will be highlighted. As CARD expands to include more pathogens, genomes, plasmids, and ontology terms this tool will grow increasingly powerful in providing first-pass detection of antibiotic resistance associated genes. See license at CARD website.
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2025-09-01 |
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vcfanno
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public |
Annotate a VCF with other VCFs/BEDs/tabixed files.
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2025-09-01 |
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perl-parallel-forkmanager
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public |
A simple parallel processing fork manager
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2025-08-30 |
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perl-sys-info-driver-linux
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public |
Linux driver for Sys::Info
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2025-08-30 |
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perl-net-http
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public |
Low-level HTTP connection (client).
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2025-08-30 |
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swarm
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public |
A robust and fast clustering method for amplicon-based studies.
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2025-08-28 |
