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perl-datetime-locale
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public |
Localization support for DateTime.pm
|
2024-10-30 |
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perl-term-table
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public |
Format a header and rows into a table
|
2024-10-30 |
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pbmm2
|
public |
A minimap2 frontend for PacBio native data formats
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2024-10-29 |
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nf-core
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public |
Python package with helper tools for the nf-core community.
|
2024-10-29 |
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pbsv
|
public |
pbsv - PacBio structural variant (SV) calling and analysis tools
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2024-10-29 |
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ucsc-bedgraphtobigwig
|
public |
Convert a bedGraph file to bigWig format.
|
2024-10-29 |
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nextflow
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public |
A DSL for data-driven computational pipelines http://nextflow.io
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2024-10-29 |
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ucsc-wigtobigwig
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public |
Convert ascii format wig file (in fixedStep, variableStep).
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2024-10-29 |
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kaptive
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public |
Reports information about surface polysaccharide loci for Klebsiella pneumoniae species complex and Acinetobacter baumannii genome assemblies.
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2024-10-28 |
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lima
|
public |
lima - The PacBio Barcode Demultiplexer
|
2024-10-28 |
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bioconda-utils
|
public |
Utilities for building and managing bioconda recipes.
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2024-10-28 |
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ucsc-pslcdnafilter
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public |
Filter cDNA alignments in psl format. Filtering criteria are comparative, selecting near best in genome alignments for each given cDNA and non-comparative, based only on the quality of an individual alignment.
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2024-10-28 |
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starfish
|
public |
Standardized analysis pipeline for image-based transcriptomics.
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2024-10-28 |
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masurca
|
public |
MaSuRCA (Maryland Super-Read Celera Assembler) genome assembly software. MaSuRCA requires Illumina data, and supports third-generation PacBio/Nanopore MinION reads for hybrid assembly.
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2024-10-28 |
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shortstack
|
public |
ShortStack: Comprehensive annotation and quantification of small RNA genes
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2024-10-28 |
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nanoqc
|
public |
Create fastQC-like plots for Oxford Nanopore sequencing data.
|
2024-10-28 |
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lofreq
|
public |
A fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data
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2024-10-26 |
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fastqe
|
public |
A emoji based bioinformatics command line tool.
|
2024-10-25 |
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ucsc-blat
|
public |
Standalone BLAT v. 39x1 fast sequence search command line tool.
|
2024-10-25 |
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ucsc-twobitinfo
|
public |
Get information about sequences in a .2bit file.
|
2024-10-25 |
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ucsc-twobittofa
|
public |
Convert all or part of .2bit file to fasta.
|
2024-10-25 |
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ucsc-fatotwobit
|
public |
Convert DNA from fasta to 2bit format.
|
2024-10-25 |
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augustus
|
public |
AUGUSTUS is a gene prediction program for eukaryotes written by Mario Stanke and Oliver Keller. It can be used as an ab initio program, which means it bases its prediction purely on the sequence. AUGUSTUS may also incorporate hints on the gene structure coming from extrinsic sources such as EST, MS/MS, protein alignments and synthenic genomic alignments.
|
2024-10-24 |
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spaln
|
public |
Map and align a set of cDNA/EST or protein sequences onto a genome
|
2024-10-24 |
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gmap
|
public |
Genomic mapping and alignment program for mRNA and EST sequences.
|
2024-10-24 |
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vsearch
|
public |
A versatile open source tool for metagenomics (USEARCH alternative)
|
2024-10-24 |
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snippy
|
public |
Rapid bacterial SNP calling and core genome alignments
|
2024-10-24 |
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tantan
|
public |
tantan masks simple regions (low complexity & short-period tandem repeats) in biological sequences.
|
2024-10-24 |
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last
|
public |
LAST finds & aligns related regions of sequences.
|
2024-10-24 |
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hyphy
|
public |
An open-source software package for comparative sequence analysis using stochastic evolutionary models.
|
2024-10-22 |
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viennarna
|
public |
ViennaRNA package -- RNA secondary structure prediction and comparison
|
2024-10-22 |
|
trim-galore
|
public |
Trim Galore! is a wrapper script to automate quality and adapter trimming as well as quality control
|
2024-10-22 |
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perl-excel-writer-xlsx
|
public |
Create a new file in the Excel 2007+ XLSX format.
|
2024-10-22 |
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abyss
|
public |
Assembly By Short Sequences - a de novo, parallel, paired-end short read sequence assembler.
|
2024-10-21 |
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diamond
|
public |
Accelerated BLAST compatible local sequence aligner
|
2024-10-21 |
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centrifuge
|
public |
Classifier for metagenomic sequences. Supports classifier scripts
|
2024-10-21 |
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sevenbridges-python
|
public |
SBG API python client bindings
|
2024-10-19 |
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pyteomics
|
public |
A framework for proteomics data analysis.
|
2024-10-18 |
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ensembl-vep
|
public |
Ensembl Variant Effect Predictor
|
2024-10-18 |
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rseqc
|
public |
QC package for RNA-seq data.
|
2024-10-16 |
|
rmats
|
public |
MATS is a computational tool to detect differential alternative splicing events from RNA-Seq data.
|
2024-10-15 |
|
solvebio
|
public |
The SolveBio Python client
|
2024-10-14 |
|
perl-namespace-autoclean
|
public |
Keep imports out of your namespace
|
2024-10-14 |
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thermorawfileparser
|
public |
Wrapper around the .net (C#) ThermoFisher ThermoRawFileReader library for running on Linux with mono
|
2024-10-14 |
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openms
|
public |
OpenMS is an open-source software C++ library for LC-MS data management and analyses
|
2024-10-13 |
|
rna-seqc
|
public |
Fast, efficient RNA-Seq metrics for quality control and process optimization.
|
2024-10-11 |
|
busco
|
public |
Assessment of assembly completeness using Universal Single Copy Orthologs.
|
2024-10-11 |
|
biobb_common
|
public |
Biobb_common is the base package required to use the biobb packages.
|
2024-10-11 |
|
pyfaidx
|
public |
pyfaidx: efficient pythonic random access to fasta subsequences
|
2024-10-10 |
|
nanosim
|
public |
NanoSim is a fast and scalable read simulator for Nanopore sequencing data.
|
2024-10-10 |
