|
fastani
|
public |
FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI).
|
2024-11-26 |
|
arvados-python-client
|
public |
Python API for Arvados
|
2024-11-26 |
|
ucsc-bedtobigbed
|
public |
Convert bed file to bigBed. (BigBed version: 4)
|
2024-11-25 |
|
ensembl-vep
|
public |
Ensembl Variant Effect Predictor
|
2024-11-25 |
|
ucsc-stringify
|
public |
Convert file to C strings.
|
2024-11-25 |
|
ngs-bits
|
public |
Short-read sequencing tools
|
2024-11-25 |
|
hyphy
|
public |
An open-source software package for comparative sequence analysis using stochastic evolutionary models.
|
2024-11-25 |
|
star
|
public |
An RNA-seq read aligner.
|
2024-11-25 |
|
damidseq_pipeline
|
public |
An automated pipeline for processing DamID sequencing datasets.
|
2024-11-25 |
|
hmftools-purple
|
public |
PURPLE is a purity ploidy estimator for tumor samples.
|
2024-11-25 |
|
gmap
|
public |
Genomic mapping and alignment program for mRNA and EST sequences.
|
2024-11-25 |
|
bbmap
|
public |
BBMap is a short read aligner, as well as various other bioinformatic tools.
|
2024-11-23 |
|
fwdpy11
|
public |
Forward-time population genetic simulation in Python.
|
2024-11-22 |
|
parsnp
|
public |
Parsnp is a command-line-tool for efficient microbial core genome alignment and SNP detection.
|
2024-11-22 |
|
r-stitch
|
public |
STITCH - Sequencing To Imputation Through Constructing Haplotypes.
|
2024-11-21 |
|
rmats
|
public |
MATS is a computational tool to detect differential alternative splicing events from RNA-Seq data.
|
2024-11-21 |
|
hmftools-amber
|
public |
Generates a tumor BAF file for use in PURPLE.
|
2024-11-21 |
|
hmftools-cobalt
|
public |
Calculate read-depth counts and GC ratios to use in PURPLE.
|
2024-11-21 |
|
multiqc
|
public |
Create aggregate bioinformatics analysis reports across many samples and tools.
|
2024-11-20 |
|
meryl
|
public |
No Summary
|
2024-11-20 |
|
trinity
|
public |
Trinity assembles transcript sequences from Illumina RNA-Seq data.
|
2024-11-20 |
|
biobb_model
|
public |
Biobb_model is the Biobb module collection to check and model 3d structures, create mutations or reconstruct missing atoms.
|
2024-11-20 |
|
biobb_io
|
public |
Biobb_io is the Biobb module collection to fetch data to be consumed by the rest of the Biobb building blocks.
|
2024-11-20 |
|
racon
|
public |
Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads.
|
2024-11-19 |
|
poppunk
|
public |
PopPUNK (POPulation Partitioning Using Nucleotide Kmers)
|
2024-11-19 |
|
perl-io-compress
|
public |
IO Interface to compressed data files/buffers
|
2024-11-19 |
|
nextflow
|
public |
A DSL for data-driven computational pipelines http://nextflow.io
|
2024-11-18 |
|
muse
|
public |
An accurate and ultra-fast somatic point mutation calling tool for whole-genome sequencing (WGS) and whole-exome sequencing (WES) data from heterogeneous tumor samples.
|
2024-11-18 |
|
cnvkit
|
public |
Copy number variant detection from high-throughput sequencing.
|
2024-11-18 |
|
biobambam
|
public |
Tools for early stage alignment file processing.
|
2024-11-18 |
|
r-facets
|
public |
Cellular Fraction and Copy Numbers from Tumor Sequencing
|
2024-11-15 |
|
perl-class-methodmaker
|
public |
Create generic methods for OO Perl
|
2024-11-15 |
|
gubbins
|
public |
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins.
|
2024-11-15 |
|
beagle
|
public |
Beagle is a software package for phasing genotypes and for imputing ungenotyped markers.
|
2024-11-14 |
|
itsxpress
|
public |
ITSxpress: Software to rapidly trim the Internally Transcribed Spacer (ITS) region from FASTQ files
|
2024-11-14 |
|
gseapy
|
public |
Gene Set Enrichment Analysis in Python
|
2024-11-13 |
|
cgat-apps
|
public |
Computational Genomics Analysis Toolkit.
|
2024-11-13 |
|
teloclip
|
public |
A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
|
2024-11-13 |
|
cd-hit
|
public |
Clusters and compares protein or nucleotide sequences
|
2024-11-12 |
|
sniffles
|
public |
Sniffles is a structural variation caller using third generation sequencing (PacBio or Oxford Nanopore).
|
2024-11-12 |
|
snakemake-minimal
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
|
2024-11-11 |
|
snakemake
|
public |
A popular workflow management system aiming at full in-silico reproducibility.
|
2024-11-11 |
|
muscle
|
public |
Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences
|
2024-11-11 |
|
quast
|
public |
Quality Assessment Tool for Genome Assemblies
|
2024-11-10 |
|
dxpy
|
public |
DNAnexus Platform API bindings for Python
|
2024-11-08 |
|
fastp
|
public |
A ultra-fast FASTQ preprocessor with full features (QC/adapters/trimming/filtering/splitting...)
|
2024-11-08 |
|
bioblend
|
public |
A Python library for interacting with the Galaxy API.
|
2024-11-07 |
|
cat
|
public |
CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
|
2024-11-06 |
|
perl-ole-storage_lite
|
public |
Read and write OLE storage files.
|
2024-11-05 |
|
perl-devel-size
|
public |
Perl extension for finding the memory usage of Perl variables
|
2024-11-05 |
