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concoct
|
public |
Clustering cONtigs with COverage and ComposiTion
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2025-09-20 |
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samsift
|
public |
Advanced filtering and tagging of SAM/BAM alignments using Python expressions.
|
2025-09-19 |
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ngs-disambiguate
|
public |
Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem
|
2025-09-19 |
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snp-dists
|
public |
Convert a FASTA alignment to SNP distance matrix
|
2025-09-19 |
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smalt
|
public |
SMALT aligns DNA sequencing reads with a reference genome.
|
2025-09-18 |
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edena
|
public |
No Summary
|
2025-09-18 |
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rust-bio-tools
|
public |
A growing collection of fast and secure command line utilities for dealing with NGS data
implemented on top of Rust-Bio.
|
2025-09-18 |
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abyss
|
public |
Assembly By Short Sequences - a de novo, parallel, paired-end short read sequence assembler.
|
2025-09-18 |
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pantools
|
public |
PanTools is a pangenomic toolkit for comparative analysis of large numbers of genomes.
|
2025-09-18 |
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beagle
|
public |
Beagle is a software package for phasing genotypes and for imputing ungenotyped markers.
|
2025-09-18 |
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filtlong
|
public |
Filtlong is a tool for filtering long reads. It can take a set of long reads and produce a smaller, better subset. It uses both read length (longer is better) and read identity (higher is better) when choosing which reads pass the filter.
|
2025-09-18 |
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trinity
|
public |
Trinity assembles transcript sequences from Illumina RNA-Seq data.
|
2025-09-18 |
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snap-aligner
|
public |
Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
|
2025-09-17 |
|
dsrc
|
public |
high-performance compression of sequencing reads stored in FASTQ format
|
2025-09-16 |
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bamutil
|
public |
Programs that perform operations on SAM/BAM files, all built into a single executable, bam.
|
2025-09-16 |
|
nonpareil
|
public |
Estimate average coverage and create curves for metagenomic datasets
|
2025-09-16 |
|
idba
|
public |
IDBA-UD is a iterative De Bruijn Graph De Novo Assembler for Short Reads Sequencing data with Highly Uneven Sequencing Depth.
|
2025-09-16 |
|
advntr
|
public |
A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data
|
2025-09-16 |
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zerone
|
public |
Zerone discretizes several ChIP-seq replicates simultaneously and resolves conflicts between them.
|
2025-09-16 |
|
yass
|
public |
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain text format.
|
2025-09-16 |
|
genepop
|
public |
Population Genetic Data Analysis package.
|
2025-09-16 |
|
snp-sites
|
public |
Finds SNP sites from a multi-FASTA alignment file.
|
2025-09-16 |
|
clever-toolkit
|
public |
The clever toolkit (CTK) is a suite of tools to analyze next-generation sequencing data and, in particular, to discover and genotype insertions and deletions from paired-end reads.
|
2025-09-16 |
|
r-spp
|
public |
Analysis of ChIP-seq and other functional sequencing data [Kharchenko PV (2008) <DOI:10.1038/nbt.1508>].
|
2025-09-16 |
|
fraggenescan
|
public |
FragGeneScan is an application for finding (fragmented) genes in short reads.
|
2025-09-16 |
