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python-hppy
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public |
An intuitive HyPhy interface for Python
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2024-06-05 |
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ariba
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public |
ARIBA: Antibiotic Resistance Identification By Assembly
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2024-06-05 |
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igblast
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public |
A tool for analyzing immunoglobulin (IG) and T cell receptor (TR) sequences
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2024-06-05 |
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digestiflow-cli
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public |
Command line client for Digestiflow.
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2024-06-05 |
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perl-test2-suite
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public |
Distribution with a rich set of tools built upon the Test2 framework.
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2024-06-05 |
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forgi
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public |
RNA Graph Library
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2024-06-05 |
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pycluster
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public |
Clustering module for Python
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2024-06-05 |
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nmrglue
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public |
A module for working with NMR data in Python
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2024-06-05 |
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scrappie
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public |
Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group
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2024-06-05 |
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w4mclassfilter
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public |
Filter Workflow4Metabolomics feature list, optionally imputing NA values.
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2024-06-05 |
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ragout
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public |
Chromosome-level scaffolding using multiple references
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2024-06-05 |
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pytriangle
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public |
A python interface to the 2D triangulation program TRIANGLE
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2024-06-05 |
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peakranger
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public |
PeakRanger is a multi-purporse software suite for analyzing next-generation sequencing (NGS) data.
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2024-06-05 |
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commet
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public |
Comparing and combining multiple metagenomic datasets
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2024-06-05 |
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tssar
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public |
No Summary
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2024-06-05 |
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kmergenie
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public |
KmerGenie estimates the best k-mer length for genome de novo assembly
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2024-06-05 |
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plek
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public |
Predictor of long non-coding RNAs and mRNAs based on k-mer scheme.
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2024-06-05 |
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faqcs
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public |
Quality Control of Next Generation Sequencing Data.
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2024-06-05 |
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newick_utils
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public |
The Newick Utilities are a suite of Unix shell tools for processing phylogenetic trees. We distribute the package under the BSD License. Functions include re-rooting, extracting subtrees, trimming, pruning, condensing, drawing (ASCII graphics or SVG).
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2024-06-05 |
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solexaqa
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public |
Quality statistics and visual representations for second-generation sequencing data
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2024-06-05 |
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mztosqlite
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public |
Convert proteomics data files into a SQLite database.
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2024-06-05 |
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bioconductor-netpathminer
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public |
NetPathMiner for Biological Network Construction, Path Mining and Visualization
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2024-06-04 |
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squeakr
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public |
An Exact and Approximate k-mer Counting System
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2024-06-04 |
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ushuffle
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public |
uShuffle---a useful tool for shuffling biological sequences while preserving the k-let counts
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2024-06-04 |
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ldhelmet
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public |
Software program for statistical inference of fine-scale crossover recombination rates from population genetic data.
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2024-06-04 |
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soapdenovo2-errorcorrection
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public |
Error correction for soapdenovo2.
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2024-06-04 |
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kfoots
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public |
The package provides methods for fitting multivariate count data with a mixture model or a hidden markov model. Each mixture component is a negative multivariate random variable and an EM algorithm is used to maximize the likelihood.
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2024-06-04 |
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mash
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public |
Fast sequence distance estimator that uses MinHash
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2024-06-04 |
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smhasher
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public |
No Summary
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2024-06-04 |
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dextractor
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public |
Bax File Decoder and Data Compressor
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2024-06-04 |
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anise_basil
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public |
BASIL is a method to detect breakpoints for structural variants (including insertion breakpoints) from aligned paired HTS reads in BAM format. ANISE is a method for the assembly of large insertions from paired reads in BAM format and a list candidate insert breakpoints as generated by BASIL.
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2024-06-04 |
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htstream
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public |
HTStream is a quality control and processing pipeline for High Throughput Sequencing data.
The difference between HTStream and other tools is that HTStream uses a tab delimited fastq format that allows for streaming from application to application.
This streaming creates some awesome efficiencies when processing HTS data and makes it fully interoperable with other standard Linux tools.
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2024-06-04 |
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codingquarry
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public |
CodingQuarry: highly accurate hidden Markov model gene prediction in fungal genomes using RNA-seq transcripts.
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2024-06-04 |
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fastq-and-furious
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public |
Fast handling of FASTQ files
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2024-06-04 |
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gmtk
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public |
A publicly available toolkit for rapidly prototyping statistical models using dynamic graphical models (DGMs) and dynamic Bayesian networks (DBNs)
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2024-06-04 |
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dawg
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public |
DNA Assembly with Gaps (Dawg) is an application designed to simulate the evolution of recombinant DNA sequences in continuous time based on the robust general time reversible model with gamma and invariant rate heterogeneity and a novel length-dependent model of gap formation.
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2024-06-04 |
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treemix
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public |
TreeMix is a method for inferring the patterns of population splits and mixtures in the history of a set of populations.
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2024-06-04 |
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ococo
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public |
Ococo, the first online consensus caller.
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2024-06-04 |
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pylibseq
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public |
A Python interface to libsequence
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2024-06-04 |
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lightstringgraph
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public |
LightStringGraphs (LSG) is an external memory string graph construction tool.
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2024-06-04 |
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cassiopee
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public |
scan an input genomic sequence (dna/rna/protein) and search for a subsequence with exact match or allowing substitutions (Hamming distance) and/or insertion/deletions
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2024-06-04 |
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mgs-canopy
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public |
No Summary
|
2024-06-04 |
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mob_suite
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public |
MOB-suite is a set of tools for finding, typing and reconstruction of plasmids from draft and complete genome assemblies.
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2024-06-04 |
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airr
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public |
AIRR Community Data Representation Standard reference library for antibody and TCR sequencing data. Citations: AIRR standards <doi:10.5281/zenodo.1185414>.
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2024-06-03 |
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dendropy
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public |
A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters.
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2024-06-02 |
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vcf2maf
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public |
Convert a VCF into a MAF where each variant is annotated to only one of all possible gene isoforms.
|
2024-05-31 |
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perl-spreadsheet-parseexcel
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public |
Read information from an Excel file.
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2024-05-31 |
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bioconductor-ebimage
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public |
Image processing and analysis toolbox for R
|
2024-05-30 |
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bioconductor-dss
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public |
Dispersion shrinkage for sequencing data
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2024-05-30 |
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bioconductor-methylpipe
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public |
Base resolution DNA methylation data analysis
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2024-05-30 |
