| Package Name | Access | Summary | Updated |
|---|---|---|---|
| soapdenovo-trans | public | No Summary | 2025-07-31 |
| muscle | public | Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences | 2025-07-31 |
| bx-python | public | Tools for manipulating biological data, particularly multiple sequence alignments. | 2025-07-31 |
| racon | public | Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. | 2025-07-30 |
| delly | public | Structural variant discovery by integrated paired-end and split-read analysis. | 2025-07-30 |
| ska | public | SKA (Split Kmer Analysis) | 2025-07-30 |
| flashlfq | public | Ultrafast label-free quantification algorithm for mass-spectrometry proteomics. | 2025-07-29 |
| rdock | public | No Summary | 2025-07-29 |
| nanoblaster | public | Basic Local Alignment and Search Tool for Oxford Nanopore Long Sequences | 2025-07-28 |
| sequana | public | A set of standalone application and snakemake pipelines dedicated to NGS (new generation sequencing) analysis. | 2025-07-28 |
| diamond | public | Accelerated BLAST compatible local sequence aligner. | 2025-07-28 |
| hmftools-cobalt | public | Calculate read-depth counts and GC ratios to use in PURPLE. | 2025-07-28 |
| readfq | public | A high-speed tool to calculate reads number and total base count in FASTQ file, forked from Li Heng's original version | 2025-07-28 |
| kmergenie | public | KmerGenie estimates the best k-mer length for genome de novo assembly | 2025-07-28 |
| maker | public | MAKER is a portable and easily configurable genome annotation pipeline. | 2025-07-28 |
| graphaligner | public | Sequence to graph aligner for long reads | 2025-07-27 |
| plass | public | Plass (Protein-Level ASSembler) and PenguiN (Protein-guided Nucleotide assembler) are methods to assemble short read sequencing data on a protein level to proteins or DNA contigs | 2025-07-27 |
| mmseqs2 | public | MMseqs2: ultra fast and sensitive sequence search and clustering suite | 2025-07-27 |
| perl-dbd-sqlite | public | Self Contained RDBMS in a DBI Driver | 2025-07-24 |
| rnashapes | public | RNAshape abstraction maps structures to a tree-like domain of shapes, retaining adjacency and nesting of structural features, but disregarding helix lengths. Shape abstraction integrates well with dynamic programming algorithms, and hence it can be applied during structure prediction rather than afterwards. This avoids exponential explosion and can still give us a non-heuristic and complete account of properties of the molecule's folding space. | 2025-07-24 |
| perl-perlio-utf8_strict | public | Fast and correct UTF-8 IO. | 2025-07-24 |
| bellmans-gapc | public | A language and compiler for algebraic dynamic programming. | 2025-07-24 |
| pysam | public | Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix. | 2025-07-24 |
| star | public | An RNA-seq read aligner. | 2025-07-24 |
| cas-offinder | public | Cas-OFFinder is OpenCL based, ultrafast and versatile program that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases (RGEN). | 2025-07-24 |
