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umis
|
public |
Tools for processing UMI RNA-tag data
|
2024-06-09 |
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atropos
|
public |
trim adapters from high-throughput sequencing reads
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2024-06-09 |
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desman
|
public |
De novo Extraction of Strains from MetAgeNomes
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2024-06-09 |
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pb-falcon
|
public |
FALCON/Unzip tool-suite (originally by Jason Chin)
|
2024-06-09 |
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pysamstats
|
public |
A Python utility for calculating statistics against genome position based on sequence alignments from a SAM, BAM or CRAM file.
|
2024-06-09 |
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rmats2sashimiplot
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public |
rmats2sashimiplot
|
2024-06-09 |
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prophyle
|
public |
ProPhyle is an accurate, resource-frugal and deterministic phylogeny-based metagenomic classifier.
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2024-06-09 |
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scalpel
|
public |
Sensitive detection of INDELs (INsertions and DELetions)
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2024-06-08 |
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frogs
|
public |
FROGS is a workflow designed to metabarcoding sequence analysis
|
2024-06-07 |
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emboss
|
public |
The European Molecular Biology Open Software Suite
|
2024-06-07 |
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extract-sv-reads
|
public |
Tool for extracting splitter or discordant reads from a BAM or CRAM file.
|
2024-06-07 |
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verifybamid2
|
public |
A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
|
2024-06-07 |
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fqtools
|
public |
An efficient FASTQ manipulation suite.
|
2024-06-07 |
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segemehl
|
public |
Short read mapping with gaps
|
2024-06-07 |
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libgtextutils
|
public |
No Summary
|
2024-06-07 |
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bioconductor-ebseq
|
public |
An R package for gene and isoform differential expression analysis of RNA-seq data
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2024-06-07 |
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cmappy
|
public |
Assorted tools for interacting with .gct, .gctx, .grp, and .gmt files as well as other Connectivity Map (Broad Institute) data/tools
|
2024-06-07 |
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python-msgpack
|
public |
It's like JSON. But fast and small.
|
2024-06-07 |
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perl-dbm-deep
|
public |
A pure perl multi-level hash/array DBM that supports transactions
|
2024-06-07 |
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vphaser2
|
public |
V-Phaser 2 is a tool to call variants in genetically heterogeneous populations from ultra-deep sequence data
|
2024-06-06 |
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telseq
|
public |
A software for calculating telomere length
|
2024-06-06 |
|
cage
|
public |
Changepoint Analysis for Efficient Variant Calling
|
2024-06-06 |
|
xatlas
|
public |
xAtlas is a fast and retrainable small variant caller that has been developed at the Baylor College of Medicine Human Genome Sequencing Center.
|
2024-06-06 |
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pbbam
|
public |
PacBio BAM C++ library
|
2024-06-06 |
|
squid
|
public |
Detector for fusion-gene and non-fusion-gene transcriptomic structural variations from RNA-seq data
|
2024-06-06 |
|
gadem
|
public |
A Genetic Algorithm Guided Formation of Spaced Dyads Coupled with an EM Algorithm for Motif Discovery
|
2024-06-06 |
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pybigwig
|
public |
A python extension written in C for quick access to bigWig files.
|
2024-06-06 |
|
svdb
|
public |
structural variant database software
|
2024-06-06 |
|
atac
|
public |
No Summary
|
2024-06-06 |
|
bioconductor-flowdensity
|
public |
Sequential Flow Cytometry Data Gating
|
2024-06-06 |
|
sga
|
public |
SGA - String Graph Assembler. SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.
|
2024-06-06 |
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mawk
|
public |
mawk is an interpreter for the AWK Programming Language.
|
2024-06-06 |
|
beagle-lib
|
public |
general purpose library for evaluating the likelihood of sequence evolution on trees
|
2024-06-06 |
|
aragorn
|
public |
ARAGORN, tRNA (and tmRNA) detection
|
2024-06-06 |
|
parasail-python
|
public |
Python bindings for the parasail C library containing implementations of pairwise sequence alignment algorithms.
|
2024-06-06 |
|
prodigal
|
public |
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program
|
2024-06-06 |
|
pytabix
|
public |
Fast random access to sorted files compressed with bgzip and indexed by tabix.
|
2024-06-06 |
|
py2bit
|
public |
A package for accessing 2bit files using lib2bit
|
2024-06-06 |
|
deeptoolsintervals
|
public |
A python module creating/accessing GTF-based interval trees with associated meta-data
|
2024-06-06 |
|
bioconductor-hilbertvis
|
public |
Hilbert curve visualization
|
2024-06-06 |
|
bcov
|
public |
BCov is a software package designed for predicting protein beta-sheet topology from amino acid sequence.
|
2024-06-06 |
|
bioconductor-hyperdraw
|
public |
Visualizing Hypergaphs
|
2024-06-06 |
|
perl-statistics-r
|
public |
No Summary
|
2024-06-06 |
|
mykatlas
|
public |
Assists in discoveries of antibiotic-resistance with mykrobe
|
2024-06-06 |
|
libsequence
|
public |
A C++ class library for evolutionary genetics.
|
2024-06-06 |
|
sonlib
|
public |
Small general purpose library for C and Python with focus on bioinformatics.
|
2024-06-06 |
|
andi
|
public |
Efficient Estimation of Evolutionary Distances
|
2024-06-06 |
|
cortexpy
|
public |
A Python API for manipulating (Mc)Cortex de novo assembly graph and link data
|
2024-06-05 |
|
livekraken
|
public |
LiveKraken is a real-time metagenomic classifier for Illumina sequencing data.
|
2024-06-05 |
|
trumicount
|
public |
For NGS experiments using unique molecular identifiers (UMIs), molecules that are lost entirely during sequencing cause under- estimation of the molecule count, and amplification artifacts like PCR chimeras cause over-estimation. TRUmiCount corrects UMI data for both types of errors, thus improving the accuracy of measured molecule counts considerably.
|
2024-06-05 |
